Research output per year
Research output per year
- 1 - 50 out of 767 results
Search results
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2024
A De Novo Whole Genome Assembly and Annotation of Parelaphostrongylus tenuis
Garwood, T. J., Richards, J. E., Macchietto, M. G., Gerhold, R. W., Kania, S. A., Garbe, J. R., Fountain-Jones, N., Larsen, P. A. & Wolf, T. M., 2024, In: Journal of Nematology. 56, 1, e2024-1.Research output: Contribution to journal › Article › peer-review
Open Access -
Genetic analysis of pericarp pigmentation variation in Corn Belt dent maize
Schoemaker, D. L., Qiu, Y., de Leon, N., Hirsch, C. N. & Kaeppler, S. M., Jan 2024, In: G3: Genes, Genomes, Genetics. 14, 1, jkad256.Research output: Contribution to journal › Article › peer-review
Open Access -
Genomic resources for a historical collection of cultivated two-row European spring barley genotypes
Schreiber, M., Wonneberger, R., Haaning, A. M., Coulter, M., Russell, J., Himmelbach, A., Fiebig, A., Muehlbauer, G. J., Stein, N. & Waugh, R., Dec 2024, In: Scientific Data. 11, 1, 66.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Identification of Genes Responding to Iron or Choline Treatment for Early-Life Iron Deficiency in the Male Rat Hippocampal Transcriptomes
Liu, S. X., Calixto Mancipe, N., Gisslen, T., Georgieff, M. K. & Tran, P. V., 2024, (Accepted/In press) In: Journal of Nutrition.Research output: Contribution to journal › Article › peer-review
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Insights into the action of the pharmaceutical metformin: Targeted inhibition of the gut microbial enzyme agmatinase
Tassoulas, L. J. & Wackett, L. P., Feb 16 2024, In: iScience. 27, 2, 108900.Research output: Contribution to journal › Article › peer-review
Open Access -
Multi-level fMRI analysis applied to hemispheric specialization in the language network, functional areas, and their behavioral correlations in the ABCD sample
Day, T. K. M., Hermosillo, R., Conan, G., Randolph, A., Perrone, A., Earl, E., Byington, N., Hendrickson, T. J., Elison, J. T., Fair, D. A. & Feczko, E., Apr 2024, In: Developmental Cognitive Neuroscience. 66, 101355.Research output: Contribution to journal › Article › peer-review
Open Access -
Nystagmus in the B6(CG)Tyr(c-2J)/J Albino Mouse: A Functional and RNA-Seq Analysis
Johnson, L. L., Abrahante, J. E. & McLoon, L. K., Jan 2 2024, In: Investigative ophthalmology & visual science. 65, 1, p. 26 1 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Polyrate 2023: A computer program for the calculation of chemical reaction rates for polyatomics. New version announcement
Meana Paneda, R., Zheng, J., Bao, J. L., Zhang, S., Lynch, B. J., Corchado, J. C., Chuang, Y. Y., Fast, P. L., Hu, W. P., Liu, Y. P., Lynch, G. C., Nguyen, K. A., Jackels, C. F., Fernández-Ramos, A., Ellingson, B. A., Melissas, V. S., Villà, J., Rossi, I., Coitiño, E. L., Pu, J., & 8 others, Jan 2024, In: Computer Physics Communications. 294, 108933.Research output: Contribution to journal › Article › peer-review
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Stat5 induces androgen receptor (AR) gene transcription in prostate cancer and offers a druggable pathway to target AR signaling
Maranto, C., Sabharwal, L., Udhane, V., Pitzen, S. P., McCluskey, B., Qi, S., O’Connor, C., Devi, S., Johnson, S., Jacobsohn, K., Banerjee, A., Iczkowski, K. A., Wang, L., Dehm, S. M. & Nevalainen, M. T., Mar 2024, In: Science Advances. 10, 9, eadi2742.Research output: Contribution to journal › Article › peer-review
Open Access -
Variation in shoot architecture traits and their relationship to canopy coverage and light interception in soybean (Glycine max)
Sreekanta, S., Haaning, A., Dobbels, A., O’Neill, R., Hofstad, A., Virdi, K., Katagiri, F., Stupar, R. M., Muehlbauer, G. J. & Lorenz, A. J., Dec 2024, In: BMC plant biology. 24, 1, 194.Research output: Contribution to journal › Article › peer-review
Open Access -
Wastewater Surveillance of SARS-CoV-2 in Minnesota
Osborn, M. J., Champeau, S., Meyer, C. M., Hayden, M., Landini, L., Stark, S., Preekett, S., Vetter, S., Zirnhelt, Z., Meyer, S., Huff, D., Schacker, T. W. & Doss, C. R., Feb 2024, In: Water (Switzerland). 16, 4, 541.Research output: Contribution to journal › Article › peer-review
Open Access -
2023
Adapting perennial grain and oilseed crops for climate resiliency
Jungers, J., Runck, B., Ewing, P. M., Maaz, T., Carlson, C., Neyhart, J., Fumia, N., Bajgain, P., Subedi, S., Sharma, V., Senay, S., Hunter, M., Cureton, C., Gutknecht, J. & Kantar, M. B., Jul 1 2023, In: Crop Science. 63, 4, p. 1701-1721 21 p.Research output: Contribution to journal › Review article › peer-review
Open Access2 Scopus citations -
A Galaxy of informatics resources for MS-based proteomics
Mehta, S., Bernt, M., Chambers, M., Fahrner, M., Föll, M. C., Gruening, B., Horro, C., Johnson, J. E., Loux, V., Rajczewski, A. T., Schilling, O., Vandenbrouck, Y., Gustafsson, O. J. R., Thang, W. C. M., Hyde, C., Price, G., Jagtap, P. D. & Griffin, T. J., 2023, In: Expert Review of Proteomics. 20, 11, p. 251-266 16 p.Research output: Contribution to journal › Review article › peer-review
1 Scopus citations -
A latent scale model to minimize subjectivity in the analysis of visual rating data for the National Turfgrass Evaluation Program
Qu, Y., Kne, L., Graham, S., Watkins, E. & Morris, K., 2023, In: Frontiers in Plant Science. 14, 1135918.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Allergen-induced DNA release by the airway epithelium amplifies type 2 immunity
Srisomboon, Y., Iijima, K., Colwell, M., Maniak, P. J., Macchietto, M., Faulk, C., Kita, H. & O'Grady, S. M., Feb 2023, In: Journal of Allergy and Clinical Immunology. 151, 2, p. 494-508.e6Research output: Contribution to journal › Article › peer-review
6 Scopus citations -
An empirical characterization of ODE models of swarm behaviors in common foraging scenarios
Harwell, J., Sylvester, A. & Gini, M., Oct 2023, In: Autonomous Robots. 47, 7, p. 963-977 15 p.Research output: Contribution to journal › Article › peer-review
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Approximate hidden semi-Markov models for dynamic connectivity analysis in resting-state fMRI
Fiecas, M. B., Coffman, C., Xu, M., Hendrickson, T. J., Mueller, B. A., Klimes-Dougan, B. & Cullen, K. R., 2023, In: Statistics and its Interface. 16, 2, p. 259-277 19 p.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Association of hard fescue (Festuca brevipila) stress tolerances with genome mapped markers
Bushman, B., Robbins, M., Qiu, Y., Watkins, E., Hollman, A., Mihelich, N., Petrella, D. P., Breullin-Sessoms, F., Chou, M. Y. & Koch, P., 2023, (Accepted/In press) In: Crop Science.Research output: Contribution to journal › Article › peer-review
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Associations between CES1 variants and dosing and adverse effects in children taking methylphenidate
Brown, J. T., Beery, N., Taran, A., Stevens, T., Henzler, C., Badalamenti, J., Regal, R. & McCarty, C. A., Jan 18 2023, In: Frontiers in Pediatrics. 10, 958622.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Author Correction: Targeting the NF-κB pathway enhances responsiveness of mammary tumors to JAK inhibitors (Scientific Reports, (2023), 13, 1, (5349), 10.1038/s41598-023-32321-0)
Bapat, A. S., O’Connor, C. H. & Schwertfeger, K. L., Dec 2023, In: Scientific reports. 13, 1, 16689.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Branch angle and leaflet shape are associated with canopy coverage in soybean
Virdi, K., Sreekanta, S., Dobbels, A., Haaning, A., Jarquin, D., Stupar, R. M., Lorenz, A. J. & Muehlbauer, G. J., Jun 2023, In: Plant Genome. 16, 2, e20304.Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations -
Chondroitin sulfate is required for follicle epithelial integrity and organ shape maintenance in Drosophila
Knudsen, C., Koh, W. S., Izumikawa, T., Nakato, E., Akiyama, T., Kinoshita-Toyoda, A., Haugstad, G., Yu, G., Toyoda, H. & Nakato, H., Sep 2023, In: Development (Cambridge). 150, 17, dev201717.Research output: Contribution to journal › Article › peer-review
Open Access -
Co-evolution of AR gene copy number and structural complexity in endocrine therapy resistant prostate cancer
Zivanovic, A., Miller, J. T., Munro, S. A., Knutson, T. P., Li, Y., Passow, C. N., Simonaitis, P., Lynch, M., Oseth, L. A., Zhao, S. G., Feng, F. Y., Wikström, P., Corey, E., Morrissey, C., Henzler, C., Raphael, B. J. & Dehm, S. M., Sep 1 2023, In: NAR Cancer. 5, 3, zcad045.Research output: Contribution to journal › Article › peer-review
Open Access -
Comparing Open Ondemand and Jupyterhub as Interactive HPC Gateways
Milligan, M., Allan, G. T., Dunn, N. J. H. & Mix, M., Jul 23 2023, PEARC 2023 - Computing for the common good: Practice and Experience in Advanced Research Computing. Association for Computing Machinery, Inc, p. 466-468 3 p. (PEARC 2023 - Computing for the common good: Practice and Experience in Advanced Research Computing).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Consequences of poly(ethylene oxide) and poloxamer P188 on transcription in healthy and stressed myoblasts
Crabtree, A. A., Boehnke, N., Bates, F. S. & Hackel, B. J., 2023, In: Proceedings of the National Academy of Sciences of the United States of America. 120, 118, e2219885120.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Continuous Automated Analysis Workflow for MRS Studies
Zöllner, H. J., Davies-Jenkins, C. W., Lee, E. G., Hendrickson, T. J., Clarke, W. T., Edden, R. A. E., Wisnowski, J. L., Gudmundson, A. T. & Oeltzschner, G., Dec 2023, In: Journal of Medical Systems. 47, 1, 69.Research output: Contribution to journal › Article › peer-review
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Data note: Spatializing South African agricultural censuses, 1918–2017
Senay, S. D., Greyling, J. C., Pardey, P. G. & Verhoef, H., 2023, In: Agrekon. 62, 3-4, p. 328-336 9 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Decreasing mutant ATXN1 nuclear localization improves a spectrum of SCA1-like phenotypes and brain region transcriptomic profiles
Handler, H. P., Duvick, L., Mitchell, J. S., Cvetanovic, M., Reighard, M., Soles, A., Mather, K. B., Rainwater, O., Serres, S., Nichols-Meade, T., Coffin, S. L., You, Y., Ruis, B. L., O'Callaghan, B., Henzler, C., Zoghbi, H. Y. & Orr, H. T., Feb 15 2023, In: Neuron. 111, 4, p. 493-507.e6Research output: Contribution to journal › Article › peer-review
Open Access7 Scopus citations -
Deletion of Small GTPase H-Ras Rescues Memory Deficits and Reduces Amyloid Plaque-Associated Dendritic Spine Loss in Transgenic Alzheimer’s Mice
Qu, W., Jeong, A., Zhong, R., Thieschafer, J. S., Gram, A. & Li, L., Feb 2023, In: Molecular neurobiology. 60, 2, p. 495-511 17 p.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Development of a Heavy-Duty Electric Vehicle Integration and Implementation (HEVII) Tool
Badheka, A., Eagon, M. J., Fakhimi, S., Wiringa, P., Miller, E., Kotz, A. & Northrop, W., Apr 11 2023, In: SAE International Journal of Advances and Current Practices in Mobility. 5, 6, p. 2093-2105 13 p.Research output: Contribution to journal › Article › peer-review
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Disentangling a metabolic cross-feeding in a halophilic archaea-bacteria consortium
Medina-Chávez, N. O., Torres-Cerda, A., Chacón, J. M., Harcombe, W. R., De la Torre-Zavala, S. & Travisano, M., 2023, In: Frontiers in Microbiology. 14, 1276438.Research output: Contribution to journal › Article › peer-review
Open Access -
Erratum: Dual inhibition of MAPK and PI3K/AKT pathways enhances maturation of human iPSC-derived cardiomyocytes (Stem Cell Reports (2022) 17(9) (2005–2022), (S2213671122003629), (10.1016/j.stemcr.2022.07.003))
Garay, B. I., Givens, S., Abreu, P., Liu, M., Yücel, D., Baik, J., Stanis, N., Rothermel, T. M., Magli, A., Abrahante, J. E., Goloviznina, N. A., Soliman, H. A. N., Dhoke, N. R., Kyba, M., Alford, P. W., Dudley, S. C., van Berlo, J. H., Ogle, B. & Perlingeiro, R. R. C., Jan 10 2023, In: Stem Cell Reports. 18, 1, p. 411 1 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Expression of miRNAs in turkey muscle satellite cells and differential response to thermal challenge
Reed, K., Mendoza, K. M., Kono, T., Powell, A. A., Strasburg, G. M. & Velleman, S. G., 2023, In: Frontiers in Physiology. 14, 1293264.Research output: Contribution to journal › Article › peer-review
Open Access -
Extracellular-Vesicle-Based Cancer Panels Diagnose Glioblastomas with High Sensitivity and Specificity
Mut, M., Adiguzel, Z., Cakir-Aktas, C., Hanalioğlu, Ş., Gungor-Topcu, G., Kiyga, E., Isikay, I., Sarac, A., Soylemezoglu, F., Strobel, T., Ampudia-Mesias, E., Cameron, C., Aslan, T., Tekirdas, E., Hayran, M., Oguz, K. K., Henzler, C., Saydam, N. & Saydam, O., Aug 2023, In: Cancers. 15, 15, 3782.Research output: Contribution to journal › Article › peer-review
Open Access -
Gain-Scheduled QSR-Dissipative Systems: An Input-Output Approach
Anderson, L., Caverly, R. J. & Lamperski, A., 2023, 2023 American Control Conference, ACC 2023. Institute of Electrical and Electronics Engineers Inc., p. 2417-2423 7 p. (Proceedings of the American Control Conference; vol. 2023-May).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Genetic variations in idiopathic pulmonary fibrosis and patient response to pirfenidone
Kubbara, A., Amundson, W. H., Herman, A. C., Lee, A. M., Bishop, J. R. & Kim, H. J., Aug 2023, In: Heliyon. 9, 8, e18573.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
HIV-2 Immature Particle Morphology Provides Insights into Gag Lattice Stability and Virus Maturation
Talledge, N., Yang, H., Shi, K., Coray, R., Yu, G., Arndt, W. G., Meng, S., Baxter, G. C., Mendonça, L. M., Castaño-Díez, D., Aihara, H., Mansky, L. M. & Zhang, W., Aug 1 2023, In: Journal of Molecular Biology. 435, 15, 168143.Research output: Contribution to journal › Article › peer-review
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Impact of placental mTOR deficiency on peripheral insulin signaling in adult mice offspring
Beetch, M., Akhaphong, B., Wong, A., Clifton, B., Jo, S., Mohan, R., Abrahante Llorens, J. E. & Alejandro, E. U., Nov 1 2023, In: Journal of molecular endocrinology. 71, 4Research output: Contribution to journal › Article › peer-review
Open Access -
Improvements and Evaluation of the Agro-Hydrologic VegET Model for Large-Area Water Budget Analysis and Drought Monitoring
Senay, G. B., Kagone, S., Parrish, G. E. L., Khand, K., Boiko, O. & Velpuri, N. M., Aug 2023, In: Hydrology. 10, 8, 168.Research output: Contribution to journal › Article › peer-review
Open Access -
Improving the Operational Simplified Surface Energy Balance Evapotranspiration Model Using the Forcing and Normalizing Operation
Senay, G. B., Parrish, G. E. L., Schauer, M., Friedrichs, M., Khand, K., Boiko, O., Kagone, S., Dittmeier, R., Arab, S. & Ji, L., Jan 2023, In: Remote Sensing. 15, 1, 260.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
Integrative meta-omics in Galaxy and beyond
Schiml, V. C., Delogu, F., Kumar, P., Kunath, B., Batut, B., Mehta, S., Johnson, J. E., Grüning, B., Pope, P. B., Jagtap, P. D., Griffin, T. J. & Arntzen, M., Dec 2023, In: Environmental Microbiome. 18, 1, 56.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Left Ventricular Gene Expression in Heart Failure with Preserved Ejection Fraction - Profibrotic and Proinflammatory Pathways and Genes
Ye, B., Bradshaw, A. D., Abrahante, J. E., Dragon, J. A., Häußler, T. N., Bell, S. P., Hirashima, F., Lewinter, M., Zile, M. R. & Meyer, M., Aug 1 2023, In: Circulation: Heart Failure. 16, 8, p. E010395Research output: Contribution to journal › Article › peer-review
2 Scopus citations -
Major chromosome 5H haplotype switch structures the European two-rowed spring barley germplasm of the past 190 years
Wonneberger, R., Schreiber, M., Haaning, A., Muehlbauer, G. J., Waugh, R. & Stein, N., Aug 2023, In: Theoretical and Applied Genetics. 136, 8, 174.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Metaproteomic Analysis of Nasopharyngeal Swab Samples to Identify Microbial Peptides in COVID-19 Patients
Bihani, S., Gupta, A., Mehta, S. P., Rajczewski, A. T., Johnson, J. E., Borishetty, D., Griffin, T. J., Srivastava, S. & Jagtap, P. D., Aug 4 2023, In: Journal of Proteome Research. 22, 8, p. 2608-2619 12 p.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Mutualism reduces the severity of gene disruptions in predictable ways across microbial communities
Martinson, J. N. V., Chacón, J. M., Smith, B. A., Villarreal, A. R., Hunter, R. C. & Harcombe, W. R., Dec 2023, In: ISME Journal. 17, 12, p. 2270-2278 9 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Neural Circuit Markers of Familial Risk for Depression Among Healthy Youths in the Adolescent Brain Cognitive Development (ABCD) Study
Holt-Gosselin, B., Keding, T. J., Poulin, R., Brieant, A., Rueter, A., Hendrickson, T. J., Perrone, A., Byington, N., Houghton, A., Miranda-Dominguez, O., Feczko, E., Fair, D. A., Joormann, J. & Gee, D. G., 2023, (Accepted/In press) In: Biological Psychiatry: Cognitive Neuroscience and Neuroimaging.Research output: Contribution to journal › Article › peer-review
2 Scopus citations -
Nudging farmers to reduce water pollution from nitrogen fertilizer
Chai, Y., J. Pannell, D. & G. Pardey, P., Oct 2023, In: Food Policy. 120, 102525.Research output: Contribution to journal › Article › peer-review
5 Scopus citations -
Personalized functional brain network topography is associated with individual differences in youth cognition
Keller, A. S., Pines, A. R., Shanmugan, S., Sydnor, V. J., Cui, Z., Bertolero, M. A., Barzilay, R., Alexander-Bloch, A. F., Byington, N., Chen, A., Conan, G. M., Davatzikos, C., Feczko, E., Hendrickson, T. J., Houghton, A., Larsen, B., Li, H., Miranda Dominguez, O., Roalf, D. R., Perrone, A., & 5 others, Dec 2023, In: Nature communications. 14, 1, 8411.Research output: Contribution to journal › Article › peer-review
Open Access -
Polyneuro risk scores capture widely distributed connectivity patterns of cognition
Byington, N., Grimsrud, G., Mooney, M. A., Cordova, M., Doyle, O., Hermosillo, R. J. M., Earl, E., Houghton, A., Conan, G., Hendrickson, T. J., Ragothaman, A., Carrasco, C. M., Rueter, A., Perrone, A., Moore, L. A., Graham, A., Nigg, J. T., Thompson, W. K., Nelson, S. M., Feczko, E., & 2 others, Apr 2023, In: Developmental Cognitive Neuroscience. 60, 101231.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Receptor for hyaluronan-mediated motility (RHAMM) defines an invasive niche associated with tumor progression and predicts poor outcomes in breast cancer patients
Tarullo, S. E., He, Y., Daughters, C., Knutson, T. P., Henzler, C. M., Price, M. A., Shanley, R., Witschen, P., Tolg, C., Kaspar, R. E., Hallstrom, C., Gittsovich, L., Sulciner, M. L., Zhang, X., Forster, C. L., Lange, C. A., Shats, O., Desler, M., Cowan, K. H., Yee, D., & 4 others, Jul 2023, In: Journal of Pathology. 260, 3, p. 289-303 15 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations