Research output per year
Research output per year
- 45 results
Search results
-
2024
Chemi-Northern: a versatile chemiluminescent northern blot method for analysis and quantitation of RNA molecules
Mckenney, K. M., Connacher, R. P., Dunshee, E. B. & Goldstrohm, A. C., Apr 2024, In: RNA. 30, 4, p. 448-462 15 p.Research output: Contribution to journal › Article › peer-review
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Measuring Poly-Adenosine Tail Length of RNAs by High-Resolution Northern Blotting Coupled with RNase H Cleavage
Arvola, R. M. & Goldstrohm, A. C., 2024, Methods in Molecular Biology. Humana Press Inc., p. 93-111 19 p. (Methods in Molecular Biology; vol. 2723).Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Preface
Valkov, E. & Goldstrohm, A. C., 2024, In: Methods in Molecular Biology. 2723, p. vResearch output: Contribution to journal › Editorial › peer-review
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2022
A conserved domain of Drosophila RNA-binding protein Pumilio interacts with multiple CCR4–NOT deadenylase complex subunits to repress target mRNAs
Haugen, R. J., Arvola, R. M., Connacher, R. P., Roden, R. T. & Goldstrohm, A. C., Sep 2022, In: Journal of Biological Chemistry. 298, 9, 102270.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
2021
Human Pumilio proteins directly bind the CCR4-NOT deadenylase complex to regulate the transcriptome
Enwerem, I. I. I., Elrod, N. D., Chang, C. T., Lin, A., Ji, P., Bohn, J. A., Levdansky, Y., Wagner, E. J., Valkov, E. & Goldstrohm, A. C., Apr 2021, In: RNA. 27, 4, p. 445-464 20 p.Research output: Contribution to journal › Article › peer-review
Open Access26 Scopus citations -
Molecular and biological functions of TRIM-NHL RNA-binding proteins
Connacher, R. P. & Goldstrohm, A. C., Mar 1 2021, In: Wiley Interdisciplinary Reviews: RNA. 12, 2, e1620.Research output: Contribution to journal › Review article › peer-review
18 Scopus citations -
2020
Differential processing and localization of human Nocturnin controls metabolism of mRNA and nicotinamide adenine dinucleotide cofactors
Abshire, E. T., Hughes, K. L., Diao, R., Pearce, S., Gopalakrishna, S., Trievel, R. C., Rorbach, J., Freddolino, P. L. & Goldstrohm, A. C., Oct 30 2020, In: Journal of Biological Chemistry. 295, 44, p. 15112-15133 22 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
Principles of mRNA control by human PUM proteins elucidated from multimodal experiments and integrative data analysis
WOLFE, MICHAEL. B., SCHAGAT, TRISTA. L., PAULSEN, MICHELLE. T., MAGNUSON, BRIAN., LJUNGMAN, MATS., PARK, DAEYOON., ZHANG, CHI., CAMPBELL, ZACHARY. T., GOLDSTROHM, AARON. C. & FREDDOLINO, PETER. L., Nov 2020, In: RNA. 26, 11, p. 1680-1703 24 p.Research output: Contribution to journal › Article › peer-review
Open Access9 Scopus citations -
Unique repression domains of Pumilio utilize deadenylation and decapping factors to accelerate destruction of target mRNAs
Arvola, R. M., Chang, C. T., Buytendorp, J. P., Levdansky, Y., Valkov, E., Freddolino, P. L. & Goldstrohm, A. C., Feb 28 2020, In: Nucleic acids research. 48, 4, p. 1843-1871 29 p.Research output: Contribution to journal › Article › peer-review
Open Access25 Scopus citations -
2019
Biochemical and Next Generation Sequencing Approaches to Study RNA Regulation
Wagner, E. J. & Goldstrohm, A. C., Feb 15 2019, In: Methods. 155, p. 1-2 2 p.Research output: Contribution to journal › Editorial › peer-review
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Global analysis of RNA metabolism using bio-orthogonal labeling coupled with next-generation RNA sequencing
Wolfe, M. B., Goldstrohm, A. C. & Freddolino, P. L., Feb 15 2019, In: Methods. 155, p. 88-103 16 p.Research output: Contribution to journal › Review article › peer-review
Open Access5 Scopus citations -
Inhibiting transcription in cultured metazoan cells with actinomycin D to monitor mRNA turnover
Lai, W. S., Arvola, R. M., Goldstrohm, A. C. & Blackshear, P. J., Feb 15 2019, In: Methods. 155, p. 77-87 11 p.Research output: Contribution to journal › Review article › peer-review
Open Access29 Scopus citations -
Preparation of cooperative RNA recognition complexes for crystallographic structural studies
Qiu, C., Goldstrohm, A. C. & Tanaka Hall, T. M., 2019, RNA Recognition. Hargrove, A. E. (ed.). Academic Press Inc., p. 1-22 22 p. (Methods in Enzymology; vol. 623).Research output: Chapter in Book/Report/Conference proceeding › Chapter
Open Access -
Ribosome queuing enables non-AUG translation to be resistant to multiple protein synthesis inhibitors
Kearse, M. G., Goldman, D. H., Choi, J., Nwaezeapu, C., Liang, D., Green, K. M., Goldstrohm, A. C., Todd, P. K., Green, R. & Wilusz, J. E., Jul 2019, In: Genes and Development. 33, 13-14, p. 871-885 15 p.Research output: Contribution to journal › Article › peer-review
Open Access43 Scopus citations -
2018
Identification of diverse target RNAs that are functionally regulated by human pumilio proteins
Bohn, J. A., Van Etten, J. L., Schagat, T. L., Bowman, B. M., McEachin, R. C., Freddolino, P. L. & Goldstrohm, A., Jan 9 2018, In: Nucleic acids research. 46, 1, p. 362-386 25 p.Research output: Contribution to journal › Article › peer-review
Open Access53 Scopus citations -
Post-transcriptional Regulatory Functions of Mammalian Pumilio Proteins
Goldstrohm, A. C., Hall, T. M. T. & McKenney, K. M., Dec 2018, In: Trends in Genetics. 34, 12, p. 972-990 19 p.Research output: Contribution to journal › Review article › peer-review
Open Access105 Scopus citations -
Regulatory roles of vertebrate Nocturnin: insights and remaining mysteries
Hughes, K. L., Abshire, E. T. & Goldstrohm, A. C., Oct 3 2018, In: RNA Biology. 15, 10, p. 1255-1267 13 p.Research output: Contribution to journal › Review article › peer-review
Open Access5 Scopus citations -
The structure of human Nocturnin reveals a conserved ribonuclease domain that represses target transcript translation and abundance in cells
Abshire, E. T., Chasseur, J., Bohn, J. A., Del Rizzo, P. A., Freddolino, P. L., Goldstrohm, A. C. & Trievel, R. C., Jul 6 2018, In: Nucleic acids research. 46, 12, p. 6257-6270 14 p.Research output: Contribution to journal › Article › peer-review
Open Access17 Scopus citations -
2017
Combinatorial control of messenger RNAs by Pumilio, Nanos and Brain Tumor Proteins
Arvola, R. M., Weidmann, C. A., Tanaka Hall, T. M. & Goldstrohm, A. C., Nov 2 2017, In: RNA Biology. 14, 11, p. 1445-1456 12 p.Research output: Contribution to journal › Review article › peer-review
Open Access37 Scopus citations -
Integrated analysis of RNA-binding protein complexes using in vitro selection and high-throughput sequencing and sequence specificity landscapes (SEQRS)
Lou, T. F., Weidmann, C. A., Killingsworth, J., Tanaka Hall, T. M., Goldstrohm, A. C. & Campbell, Z. T., Apr 15 2017, In: Methods. 118-119, p. 171-181 11 p.Research output: Contribution to journal › Review article › peer-review
Open Access22 Scopus citations -
RAN translation at C9orf72-associated repeat expansions is selectively enhanced by the integrated stress response
Green, K. M., Glineburg, M. R., Kearse, M. G., Flores, B. N., Linsalata, A. E., Fedak, S. J., Goldstrohm, A. C., Barmada, S. J. & Todd, P. K., Dec 1 2017, In: Nature communications. 8, 1, 2005.Research output: Contribution to journal › Article › peer-review
Open Access144 Scopus citations -
2016
CGG Repeat-Associated Non-AUG Translation Utilizes a Cap-Dependent Scanning Mechanism of Initiation to Produce Toxic Proteins
Kearse, M. G., Green, K. M., Krans, A., Rodriguez, C. M., Linsalata, A. E., Goldstrohm, A. C. & Todd, P. K., Apr 21 2016, In: Molecular Cell. 62, 2, p. 314-322 9 p.Research output: Contribution to journal › Article › peer-review
Open Access118 Scopus citations -
Drosophila nanos acts as a molecular clamp that modulates the RNA-binding and repression activities of pumilio
Weidmann, C. A., Qiu, C., Arvola, R. M., Lou, T. F., Killingsworth, J., Campbell, Z. T., Tanaka Hall, T. M. & Goldstrohm, A., Aug 2 2016, In: eLife. 5, AUGUST, e17096.Research output: Contribution to journal › Article › peer-review
Open Access55 Scopus citations -
2015
Mechanisms of post-transcriptional gene regulation
Arvola, R., Abshire, E., Bohn, J. & Goldstrohm, A. C., Jan 1 2015, Post-Transcriptional Mechanisms in Endocrine Regulation. Springer International Publishing, p. 1-36 36 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
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Post-transcriptional mechanisms in endocrine regulation
Menon, K. M. J. & Goldstrohm, A. C., Jan 1 2015, Springer International Publishing. 341 p.Research output: Book/Report › Book
1 Scopus citations -
Preface
Menon, K. M. J. & Goldstrohm, A. C., Jan 1 2015, Post-Transcriptional Mechanisms in Endocrine Regulation. Springer International Publishing, p. v-viiiResearch output: Chapter in Book/Report/Conference proceeding › Foreword/postscript
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2014
In vitro analysis of RNA degradation catalyzed by deadenylase enzymes
Hrit, J., Raynard, N., Van Etten, J., Sankar, K., Petterson, A. & Goldstrohm, A. C., 2014, In: Methods in Molecular Biology. 1125, p. 325-339 15 p.Research output: Contribution to journal › Article › peer-review
2 Scopus citations -
The RNA binding domain of Pumilio antagonizes poly-adenosine binding protein and accelerates deadenylation
Weidmann, C. A., Raynard, N. A., Blewett, N. H., Van Etten, J. & Goldstrohm, A. C., Aug 2014, In: RNA. 20, 8, p. 1298-1319 22 p.Research output: Contribution to journal › Article › peer-review
56 Scopus citations -
2013
A guide to design and optimization of reporter assays for 3' untranslated region mediated regulation of mammalian messenger RNAs
Van Etten, J., Schagat, T. L. & Goldstrohm, A. C., Sep 15 2013, In: Methods. 63, 2, p. 110-118 9 p.Research output: Contribution to journal › Article › peer-review
15 Scopus citations -
2012
A eukaryotic translation initiation factor 4E-binding protein promotes mRNA decapping and is required for PUF repression
Blewett, N. H. & Goldstrohm, A. C., Oct 2012, In: Molecular and cellular biology. 32, 20, p. 4181-4194 14 p.Research output: Contribution to journal › Article › peer-review
Open Access51 Scopus citations -
Drosophila pumilio protein contains multiple autonomous repression domains that regulate mRNAs independently of nanos and brain tumor
Weidmann, C. A. & Goldstrohm, A. C., Jan 2012, In: Molecular and cellular biology. 32, 2, p. 527-540 14 p.Research output: Contribution to journal › Article › peer-review
Open Access56 Scopus citations -
Human pumilio proteins recruit multiple deadenylases to efficiently repress messenger RNAs
Van Etten, J., Schagat, T. L., Hrit, J., Weidmann, C. A., Brumbaugh, J., Coon, J. J. & Goldstrohm, A. C., Oct 19 2012, In: Journal of Biological Chemistry. 287, 43, p. 36370-36383 14 p.Research output: Contribution to journal › Article › peer-review
140 Scopus citations -
2011
A quantitative assay for measuring mRNA decapping by splinted ligation reverse transcription polymerase chain reaction: qSL-RT-PCR
Blewett, N., Coller, J. & Goldstrohm, A., Mar 2011, In: RNA. 17, 3, p. 535-543 9 p.Research output: Contribution to journal › Article › peer-review
Open Access25 Scopus citations -
2009
FBF and its dual control of gld-1 expression in the Caenorhabditis elegans germline
Suh, N., Crittenden, S. L., Goldstrohm, A., Hook, B., Thompson, B., Wickens, M. & Kimble, J., Apr 2009, In: Genetics. 181, 4, p. 1249-1260 12 p.Research output: Contribution to journal › Article › peer-review
Open Access105 Scopus citations -
2008
Chapter 5 Regulated Deadenylation In Vitro
Goldstrohm, A. C., Hook, B. A. & Wickens, M., Dec 24 2008, RNA Turnover in Eukaryotes: Nucleases, Pathways and Anaylsis of mRNA Decay. Maquat, L. & Kiledjian, M. (eds.). p. 77-106 30 p. (Methods in Enzymology; vol. 448).Research output: Chapter in Book/Report/Conference proceeding › Chapter
9 Scopus citations -
Multifunctional deadenylase complexes diversify mRNA control
Goldstrohm, A. C. & Wickens, M., Apr 2008, In: Nature Reviews Molecular Cell Biology. 9, 4, p. 337-344 8 p.Research output: Contribution to journal › Comment/debate › peer-review
324 Scopus citations -
2007
PUF protein-mediated deadenylation is catalyzed by Ccr4p
Goldstrohm, A. C., Seay, D. J., Hook, B. A. & Wickens, M., Jan 5 2007, In: Journal of Biological Chemistry. 282, 1, p. 109-114 6 p.Research output: Contribution to journal › Article › peer-review
Open Access130 Scopus citations -
Two yeast PUF proteins negatively regulate a single mRNA
Hook, B. A., Goldstrohm, A. C., Seay, D. J. & Wickens, M., May 25 2007, In: Journal of Biological Chemistry. 282, 21, p. 15430-15438 9 p.Research output: Contribution to journal › Article › peer-review
Open Access74 Scopus citations -
2006
Human transcription elongation factor CA150 localizes to splicing factor-rich nuclear speckles and assembles transcription and splicing components into complexes through its amino and carboxyl regions
Sánchez-Álvarez, M., Goldstrohm, A. C., Garcia-Blanco, M. A. & Suñé, C., Jul 2006, In: Molecular and cellular biology. 26, 13, p. 4998-5014 17 p.Research output: Contribution to journal › Article › peer-review
50 Scopus citations -
PUF proteins bind Pop2p to regulate messenger RNAs
Goldstrohm, A. C., Hook, B. A., Seay, D. J. & Wickens, M., Jun 26 2006, In: Nature Structural and Molecular Biology. 13, 6, p. 533-539 7 p.Research output: Contribution to journal › Article › peer-review
253 Scopus citations -
2003
Molecular biology: A place to die, a place to sleep
Wickens, M. & Goldstrohm, A., May 2 2003, In: Science. 300, 5620, p. 753-755 3 p.Research output: Contribution to journal › Review article › peer-review
34 Scopus citations -
2001
Co-transcriptional splicing of pre-messenger RNAs: Considerations for the mechanism of alternative splicing
Goldstrohm, A. C., Greenleaf, A. L. & Garcia-Blanco, M. A., Oct 17 2001, In: Gene. 277, 1-2, p. 31-47 17 p.Research output: Contribution to journal › Review article › peer-review
145 Scopus citations -
The transcription elongation factor CA150 interacts with RNA polymerase II and the pre-mRNA splicing factor SF1
Goldstrohm, A. C., Albrecht, T. R., Suñé, C., Bedford, M. T. & Garcia-Blanco, M. A., 2001, In: Molecular and cellular biology. 21, 22, p. 7617-7628 12 p.Research output: Contribution to journal › Article › peer-review
Open Access104 Scopus citations -
2000
An in vitro transcription system that recapitulates equine infectious anemia virus Tat-mediated inhibition of human immunodeficiency virus type 1 Tat activity demonstrates a role for positive transcription elongation factor b and associated proteins in the mechanism of Tat activation
Suñé, C., Goldstrohm, A., Peng, J., Price, D. H. & Garcia-Blanco, M. A., Sep 1 2000, In: Virology. 274, 2, p. 356-366 11 p.Research output: Contribution to journal › Article › peer-review
Open Access13 Scopus citations -
Protein-interaction modules that organize nuclear function: FF domains of CA150 bind the phosphoCTD of RNA polymerase II
Carty, S. M., Goldstrohm, A. C., Suñé, C., Garcia-Blanco, M. A. & Greenleaf, A. L., Aug 1 2000, In: Proceedings of the National Academy of Sciences of the United States of America. 97, 16, p. 9015-9020 6 p.Research output: Contribution to journal › Article › peer-review
Open Access76 Scopus citations