Research output per year
Research output per year
- 1 - 50 out of 74 results
Search results
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2024
Growth Performance, Metabolomics, and Microbiome Responses of Weaned Pigs Fed Diets Containing Growth-Promoting Antibiotics and Various Feed Additives
Trudeau, M. P., Mosher, W., Tran, H., de Rodas, B., Karnezos, T. P., Urriola, P. E., Gomez Zapata, A. M., Saqui-Salces, M., Chen, C. & Shurson, G. C., Jan 2024, In: Animals. 14, 1, 60.Research output: Contribution to journal › Article › peer-review
Open Access -
Interactions between maternal parity and feed additives drive the composition of pig gut microbiomes in the post-weaning period
Law, K., Garcia, E. R. M., Hastad, C., Murray, D., Urriola, P. E. & Gomez, A., Dec 2024, In: Journal of Animal Science and Biotechnology. 15, 1, 33.Research output: Contribution to journal › Article › peer-review
Open Access -
Maternal Programming of Nursery Pig Performance and Gut Microbiome through Live Yeast Supplementation
Law, K., Johnston, L. J., Urriola, P. E. & Gomez Zapata, A. M., Mar 2024, In: Animals. 14, 6, 910.Research output: Contribution to journal › Article › peer-review
Open Access -
Profiling pathogenic protozoan and their functional pathways in wastewater using 18S rRNA and shotgun metagenomics
Mthethwa-Hlongwa, N. P., Amoah, I. D., Gomez, A., Davison, S., Reddy, P., Bux, F. & Kumari, S., Feb 20 2024, In: Science of the Total Environment. 912, 169602.Research output: Contribution to journal › Article › peer-review
Open Access -
Timing of dietary zinc additions during gestation for improved piglet survival
Hammers, K. L., Urriola, P. E., Schwartz, M. G., Ryu, M-S., Gomez Zapata, A. M. & Johnston, L. J., 2024, In: Translational Animal Science. 8, txae030.Research output: Contribution to journal › Article › peer-review
Open Access -
2023
Dietary Zinc Supplemented in Organic Form Affects the Expression of Inflammatory Molecules in Swine Intestine
Medida, R. L., Sharma, A. K., Guo, Y., Johnston, L. J., Urriola, P. E., Gomez, A. & Saqui-Salces, M., Aug 2023, In: Animals. 13, 15, 2519.Research output: Contribution to journal › Article › peer-review
Open Access -
Experimental facility had a greater effect on growth performance, gut microbiome, and metabolome in weaned pigs than feeding diets containing subtherapeutic levels of antibiotics: A case study
Trudeau, M. P., Mosher, W., Tran, H., de Rodas, B., Karnezos, T. P., Urriola, P. E., Gomez, A., Saqui-Salces, M., Chen, C. & Shurson, G. C., Aug 2023, In: PloS one. 18, 8 August, e0285266.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
The impact of urine collection method on canine urinary microbiota detection: a cross-sectional study
Coffey, E. L., Gomez, A. M., Ericsson, A. C., Burton, E. N., Granick, J. L., Lulich, J. P. & Furrow, E., Dec 2023, In: BMC microbiology. 23, 1, 101.Research output: Contribution to journal › Article › peer-review
Open Access -
Uncovering the Resistome of a Peruvian City through a Metagenomic Analysis of Sewage Samples
Poterico, J. A., Jaramillo-Valverde, L., Pablo-Ramirez, N., Roa-Linares, V. C., Martinez-Jaramillo, C., Alvites-Arrieta, S., Ubillus, M., Palma-Lozano, D., Castrejon-Cabanillas, R., Davison, S., Gomez, A. & Guio, H., Nov 2023, In: Environments - MDPI. 10, 11, 191.Research output: Contribution to journal › Article › peer-review
Open Access -
Variable digestibility of captive northern greater galagos (Otolemur garnettii) fed experimental “frugivorous” and “invertebrate” diets
Loudon, J. E., Smith, B. K., Bianchi, S., Howells, M. E., Krowka, M. A., Gomez, A. M., Davison, S., Paine, O. C. C. & Sponheimer, M., Sep 1 2023, In: Zoo Biology. 42, 5, p. 644-650 7 p.Research output: Contribution to journal › Article › peer-review
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2022
Characterization of the urogenital microbiome in Miniature Schnauzers with and without calcium oxalate urolithiasis
Coffey, E. L., Gomez, A. M., Burton, E. N., Granick, J. L., Lulich, J. P. & Furrow, E., Jul 2022, In: Journal of veterinary internal medicine. 36, 4, p. 1341-1352 12 p.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
Dietary zinc restriction affects the expression of genes related to immunity and stress response in the small intestine of pigs
Medida, R. L., Sharma, A. K., Guo, Y., Johnston, L., Urriola, P. E., Gomez, A. & Saqui-Salces, M., Nov 22 2022, In: Journal of Nutritional Science. 11, e104.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Functional signatures of ex-vivo dental caries onset
Moussa, D. G., Sharma, A. K., Mansour, T. A., Witthuhn, B., Perdigão, J., Rudney, J. D., Aparicio, C. & Gomez, A., 2022, In: Journal of Oral Microbiology. 14, 1, 2123624.Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations -
Gastrointestinal symbiont diversity in wild gorilla: A comparison of bacterial and strongylid communities across multiple localities
Mason, B., Petrzelkova, K. J., Kreisinger, J., Bohm, T., Cervena, B., Fairet, E., Fuh, T., Gomez, A., Knauf, S., Maloueki, U., Modry, D., Shirley, M. H., Tagg, N., Wangue, N. & Pafco, B., Aug 2022, In: Molecular ecology. 31, 15, p. 4127-4145 19 p.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Heritable oral microbes and their importance in microbiome research for public health
Gomez, A., Apr 13 2022, In: Cell Host and Microbe. 30, 4, p. 439-443 5 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Microbiome network traits in the rumen predict average daily gain in beef cattle under different backgrounding systems
Omontese, B. O., Sharma, A. K., Davison, S., Jacobson, E., DiConstanzo, A., Webb, M. J. & Gomez, A., Dec 2022, In: Animal Microbiome. 4, 1, 25.Research output: Contribution to journal › Article › peer-review
Open Access10 Scopus citations -
Specialized digestive adaptations within the hindgut of a colobine monkey
Liu, R., Amato, K., Hou, R., Gomez, A., Dunn, D. W., Zhang, J., Garber, P. A., Chapman, C. A., Righini, N., He, G., Fang, G., Li, Y., Li, B. & Guo, S., Mar 29 2022, In: The Innovation. 3, 2, 100207.Research output: Contribution to journal › Article › peer-review
Open Access10 Scopus citations -
The primate gut mycobiome-bacteriome interface is impacted by environmental and subsistence factors
Sharma, A. K., Davison, S., Pafco, B., Clayton, J. B., Rothman, J. M., McLennan, M. R., Cibot, M., Fuh, T., Vodicka, R., Robinson, C. J., Petrzelkova, K. & Gomez, A., Dec 2022, In: NPJ biofilms and microbiomes. 8, 1, 12.Research output: Contribution to journal › Article › peer-review
Open Access9 Scopus citations -
2021
Assessing the Influence of Environmental Sources on the Gut Mycobiome of Tibetan Macaques
Sun, B., Xia, Y., Davison, S., Gomez, A., Garber, P. A., Amato, K. R., Xu, X., Xia, D. P., Wang, X. & Li, J. H., Aug 4 2021, In: Frontiers in Microbiology. 12, 730477.Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations -
Captivity Is Associated With Gut Mycobiome Composition in Tibetan Macaques (Macaca thibetana)
Sun, B., Xia, Y., Garber, P. A., Amato, K. R., Gomez, A., Xu, X., Li, W., Huang, M., Xia, D., Wang, X. & Li, J., Apr 16 2021, In: Frontiers in Microbiology. 12, 665853.Research output: Contribution to journal › Article › peer-review
Open Access14 Scopus citations -
Disinfection of maternal environments is associated with piglet microbiome composition from birth to weaning
Law, K., Lozinski, B., Torres, I., Davison, S., Hilbrands, A., Nelson, E., Parra-Suescun, J., Johnston, L. & Gomez, A., Oct 2021, In: mSphere. 6, 5, e00663-21.Research output: Contribution to journal › Article › peer-review
Open Access14 Scopus citations -
Erratum for Gomez et al., “Plasticity in the Human Gut Microbiome Defies Evolutionary Constraints”
Gomez, A., Sharma, A. K., Mallott, E. K., Petrzelkova, K. J., Robinson, C. A. J., Yeoman, C. J., Carbonero, F., Pafco, B., Rothman, J. M., Ulanov, A., Vlckova, K., Amato, K. R., Schnorr, S. L., Dominy, N. J., Modry, D., Todd, A., Torralba, M., Nelson, K. E., Burns, M. B., Blekhman, R., & 7 others, Mar 2021, In: mSphere. 6, 2, e00168.Research output: Contribution to journal › Article › peer-review
Open Access -
Interspecies variation in hominid gut microbiota controls host gene regulation
Muehlbauer, A. L., Richards, A. L., Alazizi, A., Burns, M. B., Gomez, A., Clayton, J. B., Petrzelkova, K., Cascardo, C., Resztak, J., Wen, X., Pique-Regi, R., Luca, F. & Blekhman, R., Nov 23 2021, In: Cell reports. 37, 8, 110057.Research output: Contribution to journal › Article › peer-review
Open Access8 Scopus citations -
Microbioma gastrointestinal en primates: Conexión salud-evolución
Translated title of the contribution :The gut microbiome of nonhuman primates: Lessons in ecology, health and evolution Research output: Contribution to journal › Article › peer-review
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The Horse Gut Microbiome Responds in a Highly Individualized Manner to Forage Lignification
Gomez, A., Sharma, A. K., Grev, A., Sheaffer, C. & Martinson, K., Jan 2021, In: Journal of Equine Veterinary Science. 96, 103306.Research output: Contribution to journal › Article › peer-review
8 Scopus citations -
Viruses in extreme environments, current overview, and biotechnological potential
Gil, J. F., Mesa, V., Estrada-Ortiz, N., Lopez-Obando, M., Gómez, A. & Plácido, J., Jan 2021, In: Viruses. 13, 1, 81.Research output: Contribution to journal › Review article › peer-review
Open Access15 Scopus citations -
2020
Biodiversity of protists and nematodes in the wild nonhuman primate gut
Mann, A. E., Mazel, F., Lemay, M. A., Morien, E., Billy, V., Kowalewski, M., Di Fiore, A., Link, A., Goldberg, T. L., Tecot, S., Baden, A. L., Gomez, A., Sauther, M. L., Cuozzo, F. P., Rice, G. A. O., Dominy, N. J., Stumpf, R., Lewis, R. J., Swedell, L., Amato, K., & 1 others, Feb 1 2020, In: ISME Journal. 14, 2, p. 609-622 14 p.Research output: Contribution to journal › Article › peer-review
Open Access22 Scopus citations -
Maternal carriage of Prevotella during pregnancy associates with protection against food allergy in the offspring
the BIS Investigator Group & the J. Craig Venter Institute, Dec 1 2020, In: Nature communications. 11, 1, 1452.Research output: Contribution to journal › Article › peer-review
Open Access80 Scopus citations -
Oral Microbiome Profiling in Smokers with and without Head and Neck Cancer Reveals Variations Between Health and Disease
Sharma, A. K., DeBusk, W. T., Stepanov, I., Gomez, A. & Khariwala, S. S., May 1 2020, In: Cancer Prevention Research. 13, 5, p. 463-474 12 p.Research output: Contribution to journal › Article › peer-review
Open Access17 Scopus citations -
Traditional human populations and nonhuman primates show parallel gut microbiome adaptations to analogous ecological conditions
Sharma, A. K., Petrzelkova, K., Pafco, B., Robinson, C. A. J., Fuh, T., Wilson, B. A., Stumpf, R. M., Torralba, M. G., Blekhman, R., White, B., Nelson, K. E., Leigh, S. R. & Gomez, A., Dec 22 2020, In: mSystems. 5, 6, e00815-20.Research output: Contribution to journal › Article › peer-review
Open Access13 Scopus citations -
2019
Association of flavonifractor plautii, a flavonoid-degrading bacterium, with the gut microbiome of colorectal cancer patients in India
Gupta, A., Dhakan, D. B., Maji, A., Saxena, R., Vishnu Prasoodanan, P. K., Mahajan, S., Pulikkan, J., Kurian, J., Gomez, A. M., Scaria, J., Amato, K. R., Sharma, A. K. & Sharma, V. K., 2019, In: mSystems. 4, 6, e00438.Research output: Contribution to journal › Article › peer-review
Open Access92 Scopus citations -
Convergence of human and Old World monkey gut microbiomes demonstrates the importance of human ecology over phylogeny
Amato, K. R., Mallott, E. K., McDonald, D., Dominy, N. J., Goldberg, T., Lambert, J. E., Swedell, L., Metcalf, J. L., Gomez, A., Britton, G. A. O., Stumpf, R. M., Leigh, S. R. & Knight, R., Oct 8 2019, In: Genome biology. 20, 1, 201.Research output: Contribution to journal › Article › peer-review
Open Access47 Scopus citations -
Evolutionary trends in host physiology outweigh dietary niche in structuring primate gut microbiomes
Amato, K. R., G. Sanders, J., Song, S. J., Nute, M., Metcalf, J. L., Thompson, L. R., Morton, J. T., Amir, A., J. McKenzie, V., Humphrey, G., Gogul, G., Gaffney, J., L. Baden, A., A.O. Britton, G., P. Cuozzo, F., Di Fiore, A., J. Dominy, N., L. Goldberg, T., Gomez, A., Kowalewski, M. M., & 9 others, Mar 1 2019, In: ISME Journal. 13, 3, p. 576-587 12 p.Research output: Contribution to journal › Article › peer-review
Open Access200 Scopus citations -
Gut microbiome composition of wild western lowland gorillas is associated with individual age and sex factors
Pafčo, B., Sharma, A. K., Petrželková, K. J., Vlčková, K., Todd, A., Yeoman, C. J., Wilson, B. A., Stumpf, R., White, B. A., Nelson, K. E., Leigh, S. & Gomez, A., Jul 2019, In: American Journal of Physical Anthropology. 169, 3, p. 575-585 11 p.Research output: Contribution to journal › Article › peer-review
Open Access16 Scopus citations -
Host and microbiome genome-wide association studies: Current state and challenges
Awany, D., Allali, I., Dalvie, S., Hemmings, S., Mwaikono, K. S., Thomford, N. E., Gomez, A., Mulder, N. & Chimusa, E. R., 2019, In: Frontiers in Genetics. 10, JAN, 637.Research output: Contribution to journal › Review article › peer-review
Open Access51 Scopus citations -
Long-term impact of oral surgery with or without amoxicillin on the oral microbiome-A prospective cohort study
Menon, R. K., Gomez, A., Brandt, B. W., Leung, Y. Y., Gopinath, D., Watt, R. M., Crielaard, W., Nelson, K. E. & Botelho, M. G., Dec 1 2019, In: Scientific reports. 9, 1, 18761.Research output: Contribution to journal › Article › peer-review
Open Access11 Scopus citations -
Mapping gastrointestinal gene expression patterns in wild primates and humans via fecal RNA-seq
Sharma, A. K., Pafčo, B., Vlčková, K., Červená, B., Kreisinger, J., Davison, S., Beeri, K., Fuh, T., Leigh, S. R., Burns, M. B., Blekhman, R., Petrželková, K. J. & Gomez, A., Jun 14 2019, In: BMC Genomics. 20, 1, 493.Research output: Contribution to journal › Article › peer-review
Open Access9 Scopus citations -
Plasticity in the human gut microbiome defies evolutionary constraints
Gomez, A., Sharma, A. K., Mallott, E. K., Petrzelkova, K. J., Robinson, C. A. J., Yeoman, C. J., Carbonero, F., Pafco, B., Rothman, J. M., Ulanov, A., Vlckova, K., Amato, K. R., Schnorr, S. L., Dominy, N. J., Modry, D., Todd, A., Torralba, M., Nelson, K. E., Burns, M. B., Blekhman, R., & 7 others, 2019, In: mSphere. 4, 4, e00271-19.Research output: Contribution to journal › Article › peer-review
Open Access35 Scopus citations -
Relación microbioma, salud y producción en las ciencias pecuarias
Translated title of the contribution :Relationship of microbiome, health and production in animal science Research output: Contribution to journal › Article › peer-review
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The gut microbiome and metabolome of saddleback tamarins (Leontocebus weddelli): Insights into the foraging ecology of a small-bodied primate
Garber, P. A., Mallott, E. K., Porter, L. M. & Gomez, A., Oct 1 2019, In: American journal of primatology. 81, 10-11, e23003.Research output: Contribution to journal › Article › peer-review
9 Scopus citations -
The gut microbiome and metabolome of saddleback tamarins (Leontocebus weddelli): Insights into the foraging ecology of a small-bodied primate
Garber, P. A., Mallott, E. K., Porter, L. M. & Gomez, A., Oct 1 2019, In: American journal of primatology. 81, 10-11, e23003.Research output: Contribution to journal › Article › peer-review
9 Scopus citations -
The unique composition of Indian gut microbiome, gene catalogue, and associated fecal metabolome deciphered using multi-omics approaches
Dhakan, D. B., Maji, A., Sharma, A. K., Saxena, R., Pulikkan, J., Grace, T., Gomez, A., Scaria, J., Amato, K. R. & Sharma, V. K., Jan 30 2019, In: GigaScience. 8, 3Research output: Contribution to journal › Article › peer-review
Open Access106 Scopus citations -
Xylitol and sorbitol effects on the microbiome of saliva and plaque
Rafeek, R., Carrington, C. V. F., Gomez, A., Harkins, D., Torralba, M., Kuelbs, C., Addae, J., Moustafa, A. & Nelson, K. E., Jan 1 2019, In: Journal of Oral Microbiology. 11, 1, 1536181.Research output: Contribution to journal › Article › peer-review
Open Access22 Scopus citations -
2018
Fecal hyodeoxycholic acid is correlated with tylosin-induced microbiome changes in growing pigs
Trudeau, M. P., Zhou, Y., Leite, F. L., Gomez, A., Urriola, P. E., Shurson, G. C., Chen, C. & Isaacson, R. E., Aug 28 2018, In: Frontiers in Veterinary Science. 5, AUG, 196.Research output: Contribution to journal › Article › peer-review
Open Access8 Scopus citations -
Identification of metolachlor mineralizing bacteria in aerobic and anaerobic soils using DNA-stable isotope probing
Kanissery, R. G., Welsh, A., Gomez, A., Connor, L. & Sims, G. K., Apr 1 2018, In: Biodegradation. 29, 2, p. 117-128 12 p.Research output: Contribution to journal › Article › peer-review
7 Scopus citations -
Impact of stress on the gut microbiome of free-ranging western lowland gorillas
Vlčková, K., Shutt-Phillip, K., Heisterman, M., Pafčo, B., Petrželkov, K. J., Todd, A., Modrý, D., Nelson, K. E., Wilson, B. A., Stumpf, R. M., White, B. A., Leigh, S. R. & Gomez, A., Jan 2018, In: Microbiology (United Kingdom). 164, 1, p. 40-44 5 p., 000587.Research output: Contribution to journal › Article › peer-review
Open Access28 Scopus citations -
Organ-On-A-Chip in vitro Models of the Brain and the Blood-Brain Barrier and Their Value to Study the Microbiota-Gut-Brain Axis in Neurodegeneration.
Contributing Authors, 2018, Current opinion in biotechnology. Springer US, p. 247-257 11 p. (Current opinion in biotechnology; vol. 13).Research output: Chapter in Book/Report/Conference proceeding › Chapter
518 Scopus citations -
Relationships between gastrointestinal parasite infections and the fecal microbiome in free-ranging western lowland gorillas
Vlčková, K., Pafčo, B., Petrželková, K. J., Modrý, D., Todd, A., Yeoman, C. J., Torralba, M., Wilson, B. A., Stumpf, R. M., White, B. A., Nelson, K. E., Leigh, S. R. & Gomez, A., Jun 15 2018, In: Frontiers in Microbiology. 9, JUN, 1202.Research output: Contribution to journal › Article › peer-review
Open Access16 Scopus citations -
Spatial and Environmental Variation of the Human Hair Microbiota
Brinkac, L., Clarke, T. H., Singh, H., Greco, C., Gomez, A., Torralba, M. G., Frank, B. & Nelson, K. E., Dec 1 2018, In: Scientific reports. 8, 1, 9017.Research output: Contribution to journal › Article › peer-review
Open Access23 Scopus citations -
Supragingival plaque microbiome ecology and functional potential in the context of health and disease
Espinoza, J. L., Harkins, D. M., Torralba, M., Gomez, A., Highlander, S. K., Jones, M. B., Leong, P., Saffery, R., Bockmann, M., Kuelbs, C., Inman, J. M., Hughes, T., Craig, J. M., Nelson, K. E. & Dupont, C. L., Nov 1 2018, In: mBio. 9, 6, e01631-18.Research output: Contribution to journal › Article › peer-review
Open Access51 Scopus citations