Research output per year
Research output per year
- 36 results
Search results
-
2022
A Reference Genome Sequence Resource for the Sugar Beet Root Rot Pathogen Aphanomyces cochlioides
Botkin, J., Chanda, A. K., Martin, F. N. & Hirsch, C. D., Aug 2022, In: Molecular Plant-Microbe Interactions. 35, 8, p. 706-710 5 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Corrigendum to “Description and functional analysis of the transcriptome from malting barley” [Genomics 113 (2021) 3310–3324] (Genomics (2021) 113(5) (3310–3324), (S0888754321002895), (10.1016/j.ygeno.2021.07.011))
Vinje, M. A., Henson, C. A., Duke, S. H., Simmons, C. H., Le, K., Hall, E. & Hirsch, C. D., Jan 2022, In: Genomics. 114, 1, p. 471-472 2 p.Research output: Contribution to journal › Comment/debate › peer-review
Open Access -
Opportunities and challenges in phenotyping row crops using drone-based RGB imaging
Sweet, D. D., Tirado, S. B., Springer, N. M., Hirsch, C. N. & Hirsch, C. D., 2022, In: Plant Phenome Journal. 5, 1, e20044.Research output: Contribution to journal › Review article › peer-review
Open Access8 Scopus citations -
Wheat-Net: An Automatic Dense Wheat Spike Segmentation Method Based on an Optimized Hybrid Task Cascade Model
Zhang, J., Min, A., Steffenson, B. J., Su, W. H., Hirsch, C. D., Anderson, J., Wei, J., Ma, Q. & Yang, C., Feb 10 2022, In: Frontiers in Plant Science. 13, 834938.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
2021
Automatic evaluation of wheat resistance to fusarium head blight using dual mask-rcnn deep learning frameworks in computer vision
Su, W. H., Zhang, J., Yang, C., Page, R., Szinyei, T., Hirsch, C. D. & Steffenson, B. J., Jan 1 2021, In: Remote Sensing. 13, 1, p. 1-20 20 p., 26.Research output: Contribution to journal › Article › peer-review
Open Access74 Scopus citations -
Building a reference transcriptome for the hexaploid hard fescue turfgrass (Festuca brevipila) using a combination of PacBio Isoseq and Illumina sequencing
Qiu, Y., Yang, Y., Hirsch, C. D. & Watkins, E., Jul 1 2021, In: Crop Science. 61, 4, p. 2798-2811 14 p.Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations -
Description and functional analysis of the transcriptome from malting barley
Vinje, M. A., Henson, C. A., Duke, S. H., Simmons, C. H., Le, K., Hall, E. & Hirsch, C. D., Sep 2021, In: Genomics. 113, 5, p. 3310-3324 15 p.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
Hyperspectral imaging and improved feature variable selection for automated determination of deoxynivalenol in various genetic lines of barley kernels for resistance screening
Su, W. H., Yang, C., Dong, Y., Johnson, R., Page, R., Szinyei, T., Hirsch, C. D. & Steffenson, B. J., May 1 2021, In: Food Chemistry. 343, 128507.Research output: Contribution to journal › Article › peer-review
Open Access40 Scopus citations -
Identification of Candidate Susceptibility Genes to Puccinia graminis f. sp. tritici in Wheat
Henningsen, E. C., Omidvar, V., Della Coletta, R., Michno, J. M., Gilbert, E., Li, F., Miller, M. E., Myers, C. L., Gordon, S. P., Vogel, J. P., Steffenson, B. J., Kianian, S. F., Hirsch, C. D. & Figueroa, M., Apr 21 2021, In: Frontiers in Plant Science. 12, 657796.Research output: Contribution to journal › Article › peer-review
Open Access8 Scopus citations -
Single-parent expression drives dynamic gene expression complementation in maize hybrids
Li, Z., Zhou, P., Della Coletta, R., Zhang, T., Brohammer, A. B., H. O’Connor, C., Vaillancourt, B., Lipzen, A., Daum, C., Barry, K., de Leon, N., Hirsch, C. D., Buell, C. R., Kaeppler, S. M., Springer, N. M. & Hirsch, C. N., Jan 2021, In: Plant Journal. 105, 1, p. 93-107 15 p.Research output: Contribution to journal › Article › peer-review
Open Access15 Scopus citations -
2020
Evaluating and mapping grape color using image-based phenotyping
Underhill, A. N., Hirsch, C. D. & Clark, M. D., 2020, In: Plant Phenomics. 2020, 8086309.Research output: Contribution to journal › Article › peer-review
Open Access17 Scopus citations -
Evaluation of mask RCNN for learning to detect fusarium head blight in wheat images
Su, W. H., Zhang, J., Yang, C., Page, R., Szinyei, T., Hirsch, C. D. & Steffenson, B. J., 2020.Research output: Contribution to conference › Paper › peer-review
14 Scopus citations -
Genetic diversity and phylogeny of strains of Clavibacter nebraskensis associated with recent and historic Goss's wilt epidemics in the north Central USA
Webster, B. T., Curland, R. D., Hirsch, C. D., McNally, R. R., Malvick, D. K. & Ishimaru, C. A., Aug 1 2020, In: Plant Pathology. 69, 6, p. 990-1002 13 p.Research output: Contribution to journal › Article › peer-review
3 Scopus citations -
Image-based phenotyping identifies quantitative trait loci for cluster compactness in grape
Underhill, A., Hirsch, C. & Clark, M., 2020, In: Journal of the American Society for Horticultural Science. 145, 6, p. 363-373 11 p.Research output: Contribution to journal › Article › peer-review
Open Access14 Scopus citations -
Localized Genetic and Phenotypic Diversity of Xanthomonas translucens Associated with Bacterial Leaf Streak on Wheat and Barley in Minnesota
Curland, R. D., Gao, L., Hirsch, C. D. & Ishimaru, C. A., 2020, In: Phytopathology. 110, 2, p. 257-266 10 p.Research output: Contribution to journal › Article › peer-review
Open Access18 Scopus citations -
2019
Classifying cold-stress responses of inbred maize seedlings using RGB imaging
Enders, T. A., St. Dennis, S., Oakland, J., Callen, S. T., Gehan, M. A., Miller, N. D., Spalding, E. P., Springer, N. M. & Hirsch, C. D., Jan 2019, In: Plant Direct. 3, 1, e00104.Research output: Contribution to journal › Article › peer-review
Open Access31 Scopus citations -
Detection of Fusarium Head Blight in wheat using a deep neural network and color imaging
Qiu, R., Yang, C., Moghimi, A., Zhang, M., Steffenson, B. J. & Hirsch, C. D., Nov 1 2019, In: Remote Sensing. 11, 22, 2658.Research output: Contribution to journal › Article › peer-review
Open Access76 Scopus citations -
Dynamic patterns of transcript abundance of transposable element families in maize
Anderson, S. N., Stitzer, M. C., Zhou, P., Ross-Ibarra, J., Hirsch, C. D. & Springer, N. M., Nov 1 2019, In: G3: Genes, Genomes, Genetics. 9, 11, p. 3673-3682 10 p.Research output: Contribution to journal › Article › peer-review
Open Access21 Scopus citations -
Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation
Li, F., Upadhyaya, N. M., Sperschneider, J., Matny, O., Nguyen-Phuc, H., Mago, R., Raley, C., Miller, M. E., Silverstein, K. A. T., Henningsen, E., Hirsch, C. D., Visser, B., Pretorius, Z. A., Steffenson, B. J., Schwessinger, B., Dodds, P. N. & Figueroa, M., Dec 1 2019, In: Nature communications. 10, 1, 5068.Research output: Contribution to journal › Article › peer-review
Open Access90 Scopus citations -
Towards Improved Molecular Identification Tools in Fine Fescue (Festuca L., Poaceae) Turfgrasses: Nuclear Genome Size, Ploidy, and Chloroplast Genome Sequencing
Qiu, Y., Hirsch, C. D., Yang, Y. & Watkins, E., Dec 6 2019, In: Frontiers in Genetics. 10, 1223.Research output: Contribution to journal › Article › peer-review
Open Access12 Scopus citations -
Transposable elements contribute to dynamic genome content in maize
Anderson, S. N., Stitzer, M. C., Brohammer, A. B., Zhou, P., Noshay, J. M., O'Connor, C. H., Hirsch, C. D., Ross-Ibarra, J., Hirsch, C. N. & Springer, N. M., Dec 1 2019, In: Plant Journal. 100, 5, p. 1052-1065 14 p.Research output: Contribution to journal › Article › peer-review
Open Access58 Scopus citations -
2018
De novo assembly and phasing of dikaryotic genomes from two isolates of puccinia coronata f. Sp. avenae, the causal agent of oat crown rust
Miller, M. E., Zhang, Y., Omidvar, V., Sperschneider, J., Schwessinger, B., Raley, C., Palmer, J. M., Garnica, D., Upadhyaya, N., Rathjen, J., Taylor, J. M., Park, R. F., Dodds, P. N., Hirsch, C. D., Kianian, S. F. & Figueroa, M., Jan 1 2018, In: mBio. 9, 1, e01650-17.Research output: Contribution to journal › Article › peer-review
Open Access43 Scopus citations -
2017
Natural variation for gene expression responses to abiotic stress in maize
Waters, A. J., Makarevitch, I., Noshay, J., Burghardt, L. T., Hirsch, C. N., Hirsch, C. D. & Springer, N. M., Feb 1 2017, In: Plant Journal. 89, 4, p. 706-717 12 p.Research output: Contribution to journal › Article › peer-review
Open Access86 Scopus citations -
Transposable element influences on gene expression in plants
Hirsch, C. D. & Springer, N. M., Jan 1 2017, In: Biochimica et Biophysica Acta - Gene Regulatory Mechanisms. 1860, 1, p. 157-165 9 p.Research output: Contribution to journal › Article › peer-review
Open Access153 Scopus citations -
2016
A Toolbox of Potato Genetic and Genomic Resources
Hirsch, C. D., Buell, C. R. & Hirsch, C. N., Feb 1 2016, In: American Journal of Potato Research. 93, 1, p. 21-32 12 p.Research output: Contribution to journal › Review article › peer-review
2 Scopus citations -
Draft assembly of elite inbred line PH207 provides insights into genomic and transcriptome diversity in maize
Hirsch, C. N., Hirsch, C. D., Brohammer, A. B., Bowman, M. J., Soifer, I., Barad, O., Shem-Tov, D., Baruch, K., Lu, F., Hernandez, A. G., Fields, C. J., Wright, C. L., Koehler, K., Springer, N. M., Buckler, E., Buell, C. R., de Leon, N., Kaeppler, S. M., Childs, K. L. & Mikel, M. A., Nov 2016, In: Plant Cell. 28, 11, p. 2700-2714 15 p.Research output: Contribution to journal › Article › peer-review
Open Access127 Scopus citations -
2015
Genomic limitations to RNA sequencing expression profiling
Hirsch, C. D., Springer, N. M. & Hirsch, C. N., Nov 2015, In: Plant Journal. 84, 3, p. 491-503 13 p.Research output: Contribution to journal › Article › peer-review
Open Access23 Scopus citations -
RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome
Li, Q., Gent, J. I., Zynda, G., Song, J., Makarevitch, I., Hirsch, C. D., Hirsch, C. N., Dawe, R. K., Madzima, T. F., McGinnis, K. M., Lisch, D., Schmitz, R. J., Vaughn, M. W. & Springer, N. M., Nov 24 2015, In: Proceedings of the National Academy of Sciences of the United States of America. 112, 47, p. 14728-14733 6 p.Research output: Contribution to journal › Article › peer-review
Open Access140 Scopus citations -
2014
Reduced representation approaches to interrogate genome diversity in large repetitive plant genomes
Hirsch, C. D., Evans, J., Buell, C. R. & Hirsch, C. N., Jul 2014, In: Briefings in Functional Genomics and Proteomics. 13, 4, p. 257-267 11 p., elt051.Research output: Contribution to journal › Article › peer-review
30 Scopus citations -
Spud DB: A resource for mining sequences, genotypes, and phenotypes to accelerate potato breeding
Hirsch, C. D., Hamilton, J. P., Childs, K. L., Cepela, J., Crisovan, E., Vaillancourt, B., Hirsch, C. N., Habermann, M., Neal, B. & Buell, C. R., 2014, In: Plant Genome. 7, 1Research output: Contribution to journal › Article › peer-review
88 Scopus citations -
2013
Retrospective view of North American potato (Solanum tuberosum L.) breeding in the 20th and 21st centuries
Hirsch, C. N., Hirsch, C. D., Felcher, K., Coombs, J., Zarka, D., Van Deynze, A., De Jong, W., Veilleux, R. E., Jansky, S., Bethke, P., Douches, D. S. & Buell, C. R., Jun 2013, In: G3: Genes, Genomes, Genetics. 3, 6, p. 1003-1013 11 p.Research output: Contribution to journal › Article › peer-review
163 Scopus citations -
2012
Centromeres: Sequences, structure, and biology
Hirsch, C. D. & Jiang, J., Apr 1 2012, Plant Genomes, their Residents, and their Evolutionary Dynamics. Springer-Verlag Wien, Vol. 1. p. 59-70 12 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
10 Scopus citations -
2011
Conservation and purifying selection of transcribed genes located in a rice centromere
Fan, C., Walling, J. G., Zhang, J., Hirsch, C. D., Jiang, J. & Wing, R. A., Aug 2011, In: Plant Cell. 23, 8, p. 2821-2830 10 p.Research output: Contribution to journal › Article › peer-review
Open Access16 Scopus citations -
Organization and evolution of subtelomeric satellite repeats in the potato genome
Torres, G. A., Gong, Z., Iovene, M., Hirsch, C. D., Robin Buell, C., Bryan, G. J., Novák, P., Macas, J. & Jiang, J., Jul 2011, In: G3: Genes, Genomes, Genetics. 1, 2, p. 85-92 8 p.Research output: Contribution to journal › Article › peer-review
62 Scopus citations -
2009
Lineage-specific adaptive evolution of the centromeric protein cenh3 in diploid and allotetraploid oryza species
Hirsch, C. D., Wu, Y., Yan, H. & Jiang, J., Dec 2009, In: Molecular biology and evolution. 26, 12, p. 2877-2885 9 p.Research output: Contribution to journal › Article › peer-review
Open Access50 Scopus citations -
Structure and evolution of plant centromeres.
Nagaki, K., Walling, J., Hirsch, C., Jiang, J. & Murata, M., 2009, In: Progress in molecular and subcellular biology. 48, p. 153-179 27 p.Research output: Contribution to journal › Review article › peer-review
14 Scopus citations