Research output per year
Research output per year
- 1 - 50 out of 110 results
Search results
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2024
Advanced Care Planning Content Encoding with Natural Language Processing
Knoll, B. C., Gunderson, M., Rajamani, G., Wick, E. C., Colley, A., Lindemann, E., Rizvi, R., Diethelm, M., Hultman, G., Pierce, L., Zhang, R. & Melton, G. B., Jan 25 2024, In: Studies in health technology and informatics. 310, p. 609-613 5 p.Research output: Contribution to journal › Article › peer-review
Open Access -
A Symptom-Based Natural Language Processing Surveillance Pipeline for Post-COVID-19 Patients
Silverman, G. M., Rajamani, G., Ingraham, N. E., Glover, J. K., Sahoo, H. S., Usher, M. G., Zhang, R., Ikramuddin, F., Melnik, T. E., Melton, G. B. & Tignanelli, C. J., Jan 25 2024, In: Studies in health technology and informatics. 310, p. 860-864 5 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Complementary and Integrative Health Information in the literature: Its lexicon and named entity recognition
Zhou, H., Austin, R., Lu, S. C., Silverman, G. M., Zhou, Y., Kilicoglu, H., Xu, H. & Zhang, R., Feb 1 2024, In: Journal of the American Medical Informatics Association. 31, 2, p. 426-434 9 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Measuring Associations Between Community-Level Social Determinants of Health and Bariatric Surgery Weight Loss Outcomes
Skoufis, N., Zhang, R. & Chen, Y., Jan 25 2024, MEDINFO 2023 - The Future is Accessible: Proceedings of the 19th World Congress on Medical and Health Informatics. Bichel-Findlay, J., Otero, P., Scott, P. & Huesing, E. (eds.). IOS Press BV, p. 1317-1321 5 p. (Studies in Health Technology and Informatics; vol. 310).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
Open Access -
2023
A cross-institutional evaluation on breast cancer phenotyping NLP algorithms on electronic health records
Zhou, S., Wang, N., Wang, L., Sun, J., Blaes, A., Liu, H. & Zhang, R., Jan 2023, In: Computational and Structural Biotechnology Journal. 22, p. 32-40 9 p.Research output: Contribution to journal › Article › peer-review
Open Access -
An open natural language processing (NLP) framework for EHR-based clinical research: a case demonstration using the National COVID Cohort Collaborative (N3C)
National COVID Cohort Collaborative (N3C) Natural Language Processing (NLP) Subgroup, National COVID Cohort Collaborative (N3C), Dec 1 2023, In: Journal of the American Medical Informatics Association. 30, 12, p. 2036-2040 5 p.Research output: Contribution to journal › Article › peer-review
Open Access -
Assessing ChatGPT for Text Summarization, Simplification and Extraction Tasks
Tariq, R., Malik, S., Roy, M., Islam, M. Z., Rasheed, U., Bian, J., Zheng, K. & Zhang, R., 2023, Proceedings - 2023 IEEE 11th International Conference on Healthcare Informatics, ICHI 2023. Institute of Electrical and Electronics Engineers Inc., p. 746-749 4 p. (Proceedings - 2023 IEEE 11th International Conference on Healthcare Informatics, ICHI 2023).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Biomedical discovery through the integrative biomedical knowledge hub (iBKH)
Su, C., Hou, Y., Zhou, M., Rajendran, S., Maasch, J. R. M. A., Abedi, Z., Zhang, H., Bai, Z., Cuturrufo, A., Guo, W., Chaudhry, F. F., Ghahramani, G., Tang, J., Cheng, F., Li, Y., Zhang, R., DeKosky, S. T., Bian, J. & Wang, F., Apr 21 2023, In: iScience. 26, 4, 106460.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
DAART: a deep learning platform for deeply accelerated adaptive radiation therapy for lung cancer
Hooshangnejad, H., Chen, Q., Feng, X., Zhang, R., Farjam, R., Voong, K. R., Hales, R. K., Du, Y., Jia, X. & Ding, K., 2023, In: Frontiers in Oncology. 13, 1201679.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
deepPERFECT: Novel Deep Learning CT Synthesis Method for Expeditious Pancreatic Cancer Radiotherapy
Hooshangnejad, H., Chen, Q., Feng, X., Zhang, R. & Ding, K., Jun 2023, In: Cancers. 15, 11, 3061.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
Development and application of pharmacological statin-associated muscle symptoms phenotyping algorithms using structured and unstructured electronic health records data
Sun, B., Yew, P. Y., Chi, C. L., Song, M., Loth, M., Zhang, R. & Straka, R. J., Dec 1 2023, In: JAMIA Open. 6, 4, ooad087.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Editorial: Explainable artificial intelligence for critical healthcare applications
He, Z., Zhang, R., Diallo, G., Huang, Z. & Glicksberg, B. S., 2023, In: Frontiers in Artificial Intelligence. 6, 1282800.Research output: Contribution to journal › Editorial › peer-review
Open Access1 Scopus citations -
Effects of personalized exercise prescriptions and social media delivered through mobile health on cancer survivors’ physical activity and quality of life
Gao, Z., Ryu, S., Zhou, W., Adams, K., Hassan, M., Zhang, R., Blaes, A., Wolfson, J. & Sun, J., Nov 2023, In: Journal of Sport and Health Science. 12, 6, p. 705-714 10 p.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
Evaluation of four machine learning models for signal detection
Dauner, D. G., Leal, E., Adam, T. J., Zhang, R. & Farley, J. F., Jan 1 2023, In: Therapeutic Advances in Drug Safety. 14Research output: Contribution to journal › Article › peer-review
Open Access -
Extracting Complementary and Integrative Health Approaches in Electronic Health Records
Zhou, H., Silverman, G., Niu, Z., Silverman, J., Evans, R., Austin, R. & Zhang, R., Sep 2023, In: Journal of Healthcare Informatics Research. 7, 3, p. 277-290 14 p.Research output: Contribution to journal › Article › peer-review
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Performance of subgrouped proportional reporting ratios in the US Food and Drug Administration (FDA) adverse event reporting system
Dauner, D. G., Zhang, R., Adam, T. J., Leal, E., Heitlage, V. & Farley, J. F., 2023, In: Expert Opinion on Drug Safety. 22, 7, p. 589-597 9 p.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Protocol to implement a computational pipeline for biomedical discovery based on a biomedical knowledge graph
Su, C., Hou, Y., Levin, M., Zhang, R. & Wang, F., Dec 15 2023, In: STAR Protocols. 4, 4, 102666.Research output: Contribution to journal › Article › peer-review
Open Access -
Representing and utilizing clinical textual data for real world studies: An OHDSI approach
Keloth, V. K., Banda, J. M., Gurley, M., Heider, P. M., Kennedy, G., Liu, H., Liu, F., Miller, T., Natarajan, K., V Patterson, O., Peng, Y., Raja, K., Reeves, R. M., Rouhizadeh, M., Shi, J., Wang, X., Wang, Y., Wei, W. Q., Williams, A. E., Zhang, R., & 7 others, Jun 2023, In: Journal of Biomedical Informatics. 142, 104343.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Repurposing Drugs for Alzheimer's Diseases through Link Prediction on Biomedical Literature
Xiao, Y., Hou, Y., Zhou, H., Diallo, G., Fiszman, M., Wolfson, J., Kilicoglu, H., Chen, Y., Xu, H., Mantyh, W. G. & Zhang, R., 2023, Proceedings - 2023 IEEE 11th International Conference on Healthcare Informatics, ICHI 2023. Institute of Electrical and Electronics Engineers Inc., p. 750-752 3 p. (Proceedings - 2023 IEEE 11th International Conference on Healthcare Informatics, ICHI 2023).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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2022
A conversational agent system for dietary supplements use
Singh, E., Bompelli, A., Wan, R., Bian, J., Pakhomov, S. & Zhang, R., Jul 2022, In: BMC medical informatics and decision making. 22, 153.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Annotating Music Therapy, Chiropractic and Aquatic Exercise Using Electronic Health Record
Zhou, H., Silverman, G., Niu, Z., Silverman, J., Zhang, R., Evans, R. L. & Austin, R., 2022, Proceedings - 2022 IEEE 10th International Conference on Healthcare Informatics, ICHI 2022. Institute of Electrical and Electronics Engineers Inc., p. 610-611 2 p. (Proceedings - 2022 IEEE 10th International Conference on Healthcare Informatics, ICHI 2022).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
1 Scopus citations -
CancerBERT: A cancer domain-specific language model for extracting breast cancer phenotypes from electronic health records
Zhou, S., Wang, N., Wang, L., Liu, H. & Zhang, R., Jul 1 2022, In: Journal of the American Medical Informatics Association. 29, 7, p. 1208-1216 9 p.Research output: Contribution to journal › Article › peer-review
Open Access26 Scopus citations -
Canine Parvovirus Diagnosis Classification Utilizing Veterinary Free-Text Notes
Sheng, Z., Bollig, E., Granick, J., Zhang, R. & Beaudoin, A., 2022, Proceedings - 2022 IEEE 10th International Conference on Healthcare Informatics, ICHI 2022. Institute of Electrical and Electronics Engineers Inc., p. 614-615 2 p. (Proceedings - 2022 IEEE 10th International Conference on Healthcare Informatics, ICHI 2022).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Classifying the lifestyle status for Alzheimer’s disease from clinical notes using deep learning with weak supervision
Shen, Z., Schutte, D., Yi, Y., Bompelli, A., Yu, F., Wang, Y. & Zhang, R., Jul 2022, In: BMC medical informatics and decision making. 22, 88.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
Clinical Data Cohort Quality Improvement: The Case of the Medication Data in The University of Minnesota's Clinical Data Repository
Kiogou, S. D., Chi, C. L., Zhang, R., Ma, S. & Adam, T. J., 2022, In: AMIA ... Annual Symposium proceedings. AMIA Symposium. 2022, p. 293-302 10 p.Research output: Contribution to journal › Article › peer-review
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Discovering novel drug-supplement interactions using SuppKG generated from the biomedical literature
Schutte, D., Vasilakes, J., Bompelli, A., Zhou, Y., Fiszman, M., Xu, H., Kilicoglu, H., Bishop, J. R., Adam, T. & Zhang, R., Jul 2022, In: Journal of Biomedical Informatics. 131, 104120.Research output: Contribution to journal › Article › peer-review
Open Access7 Scopus citations -
Mining on Alzheimer’s diseases related knowledge graph to identity potential AD-related semantic triples for drug repurposing
Nian, Y., Hu, X., Zhang, R., Feng, J., Du, J., Li, F., Bu, L., Zhang, Y., Chen, Y. & Tao, C., Jul 2022, In: BMC bioinformatics. 23, 407.Research output: Contribution to journal › Article › peer-review
Open Access3 Scopus citations -
MTAP - A Distributed Framework for NLP Pipelines
Knoll, B. C., Mcewan, R., Finzel, R., Silverman, G., Zhang, R., Pakhomov, S. V. S. & Melton, G. B., 2022, Proceedings - 2022 IEEE 10th International Conference on Healthcare Informatics, ICHI 2022. Institute of Electrical and Electronics Engineers Inc., p. 537-538 2 p. (Proceedings - 2022 IEEE 10th International Conference on Healthcare Informatics, ICHI 2022).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Racial Disparities in Alzheimer's Disease and Alzheimer's Disease-Related Dementias from the Disease Progression Perspective
Zhao, H., Chu, H., Zhou, S., Yu, F., Luo, X. & Zhang, R., 2022, Proceedings - 2022 IEEE 10th International Conference on Healthcare Informatics, ICHI 2022. Institute of Electrical and Electronics Engineers Inc., p. 550-552 3 p. (Proceedings - 2022 IEEE 10th International Conference on Healthcare Informatics, ICHI 2022).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
1 Scopus citations -
2021
A fast, resource efficient, and reliable rule-based system for COVID-19 symptom identification
Sahoo, H. S., Silverman, G. M., Ingraham, N. E., Lupei, M. I., Puskarich, M. A., Finzel, R. L., Sartori, J., Zhang, R., Knoll, B. C., Liu, S., Liu, H., Melton, G. B., Tignanelli, C. J. & Pakhomov, S. V. S., Jul 1 2021, In: JAMIA Open. 4, 3, ooab070.Research output: Contribution to journal › Article › peer-review
Open Access7 Scopus citations -
Deep learning approaches for extracting adverse events and indications of dietary supplements from clinical text
Fan, Y., Zhou, S., Li, Y. & Zhang, R., Mar 1 2021, In: Journal of the American Medical Informatics Association. 28, 3, p. 569-577 9 p.Research output: Contribution to journal › Article › peer-review
9 Scopus citations -
Deep learning models in detection of dietary supplement adverse event signals from Twitter
Wang, Y., Zhao, Y., Schutte, D., Bian, J. & Zhang, R., Oct 1 2021, In: JAMIA Open. 4, 4, ooab081.Research output: Contribution to journal › Article › peer-review
Open Access4 Scopus citations -
Drug repurposing for COVID-19 via knowledge graph completion
Zhang, R., Hristovski, D., Schutte, D., Kastrin, A., Fiszman, M. & Kilicoglu, H., Mar 2021, In: Journal of Biomedical Informatics. 115, 103696.Research output: Contribution to journal › Article › peer-review
Open Access93 Scopus citations -
Identification of Dietary Supplement Use from Electronic Health Records Using Transformer-based Language Models
Zhou, S., Schutte, D., Xing, A., Chen, J., Wolfson, J., He, Z., Yu, F. & Zhang, R., Aug 2021, Proceedings - 2021 IEEE 9th International Conference on Healthcare Informatics, ISCHI 2021. Institute of Electrical and Electronics Engineers Inc., p. 513-514 2 p. (Proceedings - 2021 IEEE 9th International Conference on Healthcare Informatics, ISCHI 2021).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
1 Scopus citations -
Nlp methods for extraction of symptoms from unstructured data for use in prognostic covid-19 analytic models
Silverman, G. M., Sahoo, H. S., Ingraham, N. E., Lupei, M., Puskarich, M. A., Usher, M., Dries, J., Finzel, R. L., Murray, E., Sartori, J., Simon, G., Zhang, R., Melton, G. B., Tignanelli, C. J. & Pakhomov, S. V. S., 2021, In: Journal of Artificial Intelligence Research. 72, p. 429-474 46 p.Research output: Contribution to journal › Article › peer-review
Open Access17 Scopus citations -
Social and Behavioral Determinants of Health in the Era of Artificial Intelligence with Electronic Health Records: A Scoping Review
Bompelli, A., Wang, Y., Wan, R., Singh, E., Zhou, Y., Xu, L., Oniani, D., Kshatriya, B. S. A., Balls-Berry, J. E. & Zhang, R., 2021, In: Health Data Science. 2021, 9759016.Research output: Contribution to journal › Review article › peer-review
Open Access13 Scopus citations -
When text simplification is not enough: Could a graph-based visualization facilitate consumers' comprehension of dietary supplement information?
He, X., Zhang, R., Alpert, J., Zhou, S., Adam, T. J., Raisa, A., Peng, Y., Zhang, H., Guo, Y. & Bian, J., Jan 1 2021, In: JAMIA Open. 4, 1, ooab026.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
2020
A Prototype Conversational Agent for Dietary Supplements
Singh, E., Bompelli, A., Yang, A., Wang, A., Pakhomov, S. & Zhang, R., Nov 2020, 2020 IEEE International Conference on Healthcare Informatics, ICHI 2020. Institute of Electrical and Electronics Engineers Inc., 9374355. (2020 IEEE International Conference on Healthcare Informatics, ICHI 2020).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
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Assessing the enrichment of dietary supplement coverage in the unified medical language system
Vasilakes, J., Bompelli, A., Bishop, J. R., Adam, T. J., Bodenreider, O. & Zhang, R., Oct 1 2020, In: Journal of the American Medical Informatics Association. 27, 10, p. 1547-1555 9 p.Research output: Contribution to journal › Article › peer-review
Open Access7 Scopus citations -
Comparing NLP Systems to Extract Entities of Eligibility Criteria in Dietary Supplements Clinical Trials Using NLP-ADAPT
Bompelli, A., Silverman, G., Finzel, R., Vasilakes, J., Knoll, B., Pakhomov, S. & Zhang, R., 2020, Artificial Intelligence in Medicine - 18th International Conference on Artificial Intelligence in Medicine, AIME 2020, Proceedings. Michalowski, M. & Moskovitch, R. (eds.). Springer Science and Business Media Deutschland GmbH, p. 67-77 11 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 12299 LNAI).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
6 Scopus citations -
Deep Learning Approach to Parse Eligibility Criteria in Dietary Supplements Clinical Trials Following OMOP Common Data Model
Bompelli, A., Li, J., Xu, Y., Wang, N., Wang, Y., Adam, T., He, Z. & Zhang, R., 2020, In: AMIA ... Annual Symposium proceedings. AMIA Symposium. 2020, p. 243-252 10 p.Research output: Contribution to journal › Article › peer-review
3 Scopus citations -
Detecting associations between dietary supplement intake and sentiments within mental disorder tweets
Wang, Y., Zhao, Y., Zhang, J., Bian, J. & Zhang, R., Jun 1 2020, In: Health Informatics Journal. 26, 2, p. 803-815 13 p.Research output: Contribution to journal › Article › peer-review
Open Access10 Scopus citations -
Exploring eating disorder topics on twitter: Machine learning approach
Zhou, S., Zhao, Y., Bian, J., Haynos, A. F. & Zhang, R., Oct 2020, In: JMIR Medical Informatics. 8, 10, e18273.Research output: Contribution to journal › Article › peer-review
Open Access20 Scopus citations -
iDISK: the integrated DIetary Supplements Knowledge base
Rizvi, R. F., Vasilakes, J., Adam, T. J., Melton, G. B., Bishop, J. R., Bian, J., Tao, C. & Zhang, R., Apr 1 2020, In: Journal of the American Medical Informatics Association : JAMIA. 27, 4, p. 539-548 10 p.Research output: Contribution to journal › Article › peer-review
19 Scopus citations -
Mining Twitter to assess the determinants of health behavior toward human papillomavirus vaccination in the United States
Zhang, H., Wheldon, C., Dunn, A. G., Tao, C., Huo, J., Zhang, R., Prosperi, M., Guo, Y. & Bian, J., Feb 1 2020, In: Journal of the American Medical Informatics Association. 27, 2, p. 225-235 11 p.Research output: Contribution to journal › Article › peer-review
Open Access34 Scopus citations -
Natural language processing
Vasilakes, J., Zhou, S. & Zhang, R., Jan 1 2020, Machine Learning in Cardiovascular Medicine. Elsevier, p. 123-148 26 p.Research output: Chapter in Book/Report/Conference proceeding › Chapter
5 Scopus citations -
Natural Language Processing Methods to Extract Lifestyle Exposures for Alzheimer's Disease from Clinical Notes
Yi, Y., Shen, Z., Bompelli, A., Yu, F., Wang, Y. & Zhang, R., Nov 2020, 2020 IEEE International Conference on Healthcare Informatics, ICHI 2020. Institute of Electrical and Electronics Engineers Inc., 9374320. (2020 IEEE International Conference on Healthcare Informatics, ICHI 2020).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
5 Scopus citations -
Selected articles from the Fourth International Workshop on Semantics-Powered Data Mining and Analytics (SEPDA 2019)
He, Z., Tao, C., Bian, J. & Zhang, R., Dec 2020, In: BMC medical informatics and decision making. 20, 315.Research output: Contribution to journal › Article › peer-review
Open Access -
Selected articles from the Fourth International Workshop on Semantics-Powered Data Mining and Analytics (SEPDA 2019)
He, Z., Tao, C., Bian, J. & Zhang, R., Dec 2020, In: BMC medical informatics and decision making. 20, 315.Research output: Contribution to journal › Article › peer-review
Open Access -
2019
ALOHA: Developing an interactive graph-based visualization for dietary supplement knowledge graph through user-centered design
He, X., Zhang, R., Rizvi, R., Vasilakes, J., Yang, X., Guo, Y., He, Z., Prosperi, M., Huo, J., Alpert, J. & Bian, J., Aug 8 2019, In: BMC medical informatics and decision making. 19, 150.Research output: Contribution to journal › Article › peer-review
Open Access18 Scopus citations