TY - JOUR
T1 - ωCLUTO
T2 - A Web-Enabled Clustering Toolkit
AU - Rasmussen, Matthew D.
AU - Deshpande, Mukund S.
AU - Karypis, George
AU - Johnson, James
AU - Crow, John A.
AU - Retzel, Ernest F.
PY - 2003/10
Y1 - 2003/10
N2 - As structural and functional genomics efforts provide the biological community with ever-broadening sets of interrelated data, the need to explore such complex information for subtle relationships expands. We present wCLUTO, a Web-enabled version of the stand-alone application CLUTO, designed to apply clustering methods to genomic information. Its first application is focused on the clustering transcriptome data from microarrays. Data can be uploaded by the user into the clustering tool, a choice of several clustering methods can be made and configured, and data are presented to the user in a variety of visual formats, including a three-dimensional "mountain" view of the clusters. Parameters can be explored to rapidly examine a variety of clustering results, and the resulting clusters can be downloaded either for manipulation by other programs or to be saved in a format for publication.
AB - As structural and functional genomics efforts provide the biological community with ever-broadening sets of interrelated data, the need to explore such complex information for subtle relationships expands. We present wCLUTO, a Web-enabled version of the stand-alone application CLUTO, designed to apply clustering methods to genomic information. Its first application is focused on the clustering transcriptome data from microarrays. Data can be uploaded by the user into the clustering tool, a choice of several clustering methods can be made and configured, and data are presented to the user in a variety of visual formats, including a three-dimensional "mountain" view of the clusters. Parameters can be explored to rapidly examine a variety of clustering results, and the resulting clusters can be downloaded either for manipulation by other programs or to be saved in a format for publication.
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U2 - 10.1104/pp.103.024885
DO - 10.1104/pp.103.024885
M3 - Review article
C2 - 14555780
AN - SCOPUS:0142152472
SN - 0032-0889
VL - 133
SP - 510
EP - 516
JO - Plant physiology
JF - Plant physiology
IS - 2
ER -