A rice diversity panel evaluated for genetic and agro-morphological diversity between subpopulations and its geographic distribution

M. Liakat Ali, Anna M. McClung, Melissa H. Jia, Jennifer A. Kimball, Susan R. McCouch, Georgia C. Eizenga

Research output: Contribution to journalArticlepeer-review

51 Scopus citations

Abstract

A diverse collection of 409 Asian rice (Oryza sativa L.) accessions originating from 79 countries was fngerprinted with 36 simple sequence repeat (SSR) markers and evaluated for 18 agro-morphological traits. Genetically, the accessions clustered into five ancestral groups (subpopula-tions), indica, aus, aromatic (Group V), tropical japonica, and temperate japonica, based on model-based structure analysis. Thirty-three accessions with less than 60% ancestry from any single group were identified as admixtures. Canonical discriminant analysis identified eight agro-morphological traits (panicle number per plant, panicle length, plant height, fag leaf width, grain length, width, length:width ratio, and volume) as the main discriminatory characters among the rice accessions and between the subpopulations. Both SSR allele- and phe-notypic trait-based analyses indicated a close relationship between aus and indica and similarly between temperate japonica and tropical japonica. The aromatic (Group V) rice represents a distinct small group that is more closely related to tropical japonica based on SSR alleles but to aus and indica based on phenotype. A strong relationship between subpopulations and geographical distribution was observed. This rice diversity panel with the accompanying genetic and phenotypic information provides a valuable foundation for association mapping, understanding the basis of both genotypic and phenotypic differences within and between sub-populations, and rice improvement programs.

Original languageEnglish (US)
Pages (from-to)2021-2035
Number of pages15
JournalCrop Science
Volume51
Issue number5
DOIs
StatePublished - Sep 2011

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