Dataset for a Dugesia japonica de novo transcriptome assembly, utilized for defining the voltage-gated like ion channel superfamily

John D. Chan; Dan Zhang; Xiaolong Liu; Magdalena Z. Zarowiecki; Matthew Berriman; Jonathan S Marchant

doi:10.1016/j.dib.2016.11.022

Dataset for a Dugesia japonica de novo transcriptome assembly, utilized for defining the voltage-gated like ion channel superfamily

John D. Chan, Dan Zhang, Xiaolong Liu, Magdalena Z. Zarowiecki, Matthew Berriman, Jonathan S Marchant

Pharmacology

Research output: Contribution to journal › Article › peer-review

10 Scopus citations

Abstract

This data article provides a transcriptomic resource for the free living planarian flatworm Dugesia japonica related to the research article entitled ‘Utilizing the planarian voltage-gated ion channel transcriptome to resolve a role for a Ca²⁺ channel in neuromuscular function and regeneration (J.D. Chan, D. Zhang, X. Liu, M. Zarowiecki, M. Berriman, J.S. Marchant, 2016) [1]. Data provided in this submission comprise sequence information for the unfiltered de novo assembly, the filtered assembly and a curated analysis of voltage-gated like (VGL) ion channel sequences mined from this resource. Availability of this data should facilitate further adoption of this model by laboratories interested in studying the role of individual genes of interest in planarian physiology and regenerative biology.

Original language	English (US)
Pages (from-to)	1044-1047
Number of pages	4
Journal	Data in Brief
Volume	9
DOIs	https://doi.org/10.1016/j.dib.2016.11.022
State	Published - Dec 2016

Bibliographical note

Funding Information:
Data collection supported by NSF, United States ( MCB1615538 , JSM) and a Stem Cell Biology Training Grant ( T32 GM113846 , JDC). We thank the Parasite Genomics Group at the Wellcome Trust Sanger Institute for their assistance with sequencing samples. Transparency document

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© 2016 The Authors

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title = "Dataset for a Dugesia japonica de novo transcriptome assembly, utilized for defining the voltage-gated like ion channel superfamily",

abstract = "This data article provides a transcriptomic resource for the free living planarian flatworm Dugesia japonica related to the research article entitled {\textquoteleft}Utilizing the planarian voltage-gated ion channel transcriptome to resolve a role for a Ca2+ channel in neuromuscular function and regeneration (J.D. Chan, D. Zhang, X. Liu, M. Zarowiecki, M. Berriman, J.S. Marchant, 2016) [1]. Data provided in this submission comprise sequence information for the unfiltered de novo assembly, the filtered assembly and a curated analysis of voltage-gated like (VGL) ion channel sequences mined from this resource. Availability of this data should facilitate further adoption of this model by laboratories interested in studying the role of individual genes of interest in planarian physiology and regenerative biology.",

author = "Chan, {John D.} and Dan Zhang and Xiaolong Liu and Zarowiecki, {Magdalena Z.} and Matthew Berriman and Marchant, {Jonathan S}",

note = "Funding Information: Data collection supported by NSF, United States ( MCB1615538 , JSM) and a Stem Cell Biology Training Grant ( T32 GM113846 , JDC). We thank the Parasite Genomics Group at the Wellcome Trust Sanger Institute for their assistance with sequencing samples. Transparency document Publisher Copyright: {\textcopyright} 2016 The Authors",

year = "2016",

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doi = "10.1016/j.dib.2016.11.022",

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AU - Chan, John D.

AU - Zhang, Dan

AU - Liu, Xiaolong

AU - Zarowiecki, Magdalena Z.

AU - Berriman, Matthew

AU - Marchant, Jonathan S

N1 - Funding Information: Data collection supported by NSF, United States ( MCB1615538 , JSM) and a Stem Cell Biology Training Grant ( T32 GM113846 , JDC). We thank the Parasite Genomics Group at the Wellcome Trust Sanger Institute for their assistance with sequencing samples. Transparency document Publisher Copyright: © 2016 The Authors

PY - 2016/12

Y1 - 2016/12

N2 - This data article provides a transcriptomic resource for the free living planarian flatworm Dugesia japonica related to the research article entitled ‘Utilizing the planarian voltage-gated ion channel transcriptome to resolve a role for a Ca2+ channel in neuromuscular function and regeneration (J.D. Chan, D. Zhang, X. Liu, M. Zarowiecki, M. Berriman, J.S. Marchant, 2016) [1]. Data provided in this submission comprise sequence information for the unfiltered de novo assembly, the filtered assembly and a curated analysis of voltage-gated like (VGL) ion channel sequences mined from this resource. Availability of this data should facilitate further adoption of this model by laboratories interested in studying the role of individual genes of interest in planarian physiology and regenerative biology.

AB - This data article provides a transcriptomic resource for the free living planarian flatworm Dugesia japonica related to the research article entitled ‘Utilizing the planarian voltage-gated ion channel transcriptome to resolve a role for a Ca2+ channel in neuromuscular function and regeneration (J.D. Chan, D. Zhang, X. Liu, M. Zarowiecki, M. Berriman, J.S. Marchant, 2016) [1]. Data provided in this submission comprise sequence information for the unfiltered de novo assembly, the filtered assembly and a curated analysis of voltage-gated like (VGL) ion channel sequences mined from this resource. Availability of this data should facilitate further adoption of this model by laboratories interested in studying the role of individual genes of interest in planarian physiology and regenerative biology.

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Dataset for a Dugesia japonica de novo transcriptome assembly, utilized for defining the voltage-gated like ion channel superfamily

Abstract

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