Ensemble-averaged variational transition state theory with optimized multidimensional tunneling for enzyme kinetics and other condensed-phase reactions

Donald G. Truhlar, Jiali Gao, Mireia Garcia-Viloca, Cristobal Alhambra, Jose Corchado, Maria Luz Sanchez, Tina D. Poulsen

Research output: Contribution to journalArticlepeer-review

118 Scopus citations

Abstract

This paper provides an overview of a new method developed to include quantum mechanical effects and free energy sampling in calculations of reaction rates in enzymes. The paper includes an overview of variational transition state theory with optimized multidimensional tunneling for simple gas-phase reactions and then shows how this is extended to incorporate free energy effects and to include protein motions in the reaction coordinate by ensemble averaging. Finally we summarize recent comparisons to experiment for primary and secondary kinetic isotope effects for proton and hydride transfer reactions catalyzed by enzymes.

Original languageEnglish (US)
Pages (from-to)1136-1152
Number of pages17
JournalInternational Journal of Quantum Chemistry
Volume100
Issue number6
DOIs
StatePublished - Dec 20 2004

Keywords

  • Combined quantum mechanical/molecular mechanical method
  • Hydride transfer
  • Kinetic isotope effects
  • Potential of mean force
  • Proton transfer
  • Quantized vibrations
  • Quantum mechanical dynamics
  • Rate constants
  • Semiclassical theory of tunneling

Fingerprint

Dive into the research topics of 'Ensemble-averaged variational transition state theory with optimized multidimensional tunneling for enzyme kinetics and other condensed-phase reactions'. Together they form a unique fingerprint.

Cite this