Evaluation of two recovery methods for detection of Mycobacterium avium subsp. paratuberculosis by PCR: Direct-dilution-centrifugation and C 18-carboxypropylbetaine processing

Ahmet Özbek, Frederick C. Michel, Megan Strother, Alifiya S. Motiwala, Beverly R. Byrum, William P. Shulaw, Charles G. Thornton, Srinand Sreevatsan

Research output: Contribution to journalArticlepeer-review

11 Scopus citations

Abstract

A duplex polymerase chain reaction (PCR)-hybridization assay based on Mycobacterium avium subsp. paratuberculosis (MAP)-specific IS900 integration sites was used to evaluate two mycobacterial recovery methods from bovine feces: a direct-dilution-centrifugation method and a C18- carboxypropylbetaine (CB-18)-based method. All MAP PCR results were confirmed for absence of inhibitors using a novel PCR system based on the rpoB gene of plant chloroplasts as an internal control. The detection limits of both MAP recovery methods when coupled with PCR were determined to be between 100 and 1000 organisms. Using culture as a 'gold standard' PCR following the direct-dilution-centrifugation protocol was 92.6% sensitive and 83.7% specific, whereas PCR following the CB-18 method was 100% sensitive and 53.5% specific. Both methods were 100% specific when 60 'true' negatives from two uninfected herds were tested. Both the CB-18 and direct processing methods coupled with a target-specific amplification technique may provide greater sensitivity to diagnose subclinical animals as they were able to detect more positives, on samples derived from infected herds, than conventional culture methods; however, more extensive investigation and follow-up of suspect animals will be required to fully validate the MAP recovery and molecular detection protocols described.

Original languageEnglish (US)
Pages (from-to)145-151
Number of pages7
JournalFEMS Microbiology Letters
Volume229
Issue number2
DOIs
StatePublished - Dec 12 2003

Bibliographical note

Funding Information:
This study was supported by a seed grant from the Research Enhancement Competitive Grants Program of OARDC at The Ohio State University. A.Ö. was partly funded by a research grant from the Ohio Water Development Authority. The authors thank Juliette Hanson and the Ohio Department of Agriculture for providing samples used in this study.

Copyright:
Copyright 2017 Elsevier B.V., All rights reserved.

Keywords

  • C -carboxypropylbetaine extraction
  • Fecal polymerase chain reaction
  • Integration locus
  • Mycobacterium paratuberculosis

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