First-generation annotations for the fathead minnow (Pimephales promelas) genome

Travis W. Saari, Anthony L. Schroeder, Gerald T. Ankley, Daniel L. Villeneuve

    Research output: Contribution to journalArticlepeer-review

    7 Scopus citations

    Abstract

    Ab initio gene prediction and evidence alignment were used to produce the first annotations for the fathead minnow (Pimephales promelas) genome. We also describe a genome browser, hosted by the Society of Environmental Toxicology and Chemistry, that provides simplified access to the annotation data in context with the genomic sequence. The present study extends the utility of the fathead minnow genome and supports the continued development of this species as a model organism for predictive toxicology. Environ Toxicol Chem 2017;36:3436–3442. Published 2017 Wiley Periodicals Inc. on behalf of SETAC. This article is a US government work and, as such, is in the public domain in the United States of America.

    Original languageEnglish (US)
    Pages (from-to)3436-3442
    Number of pages7
    JournalEnvironmental Toxicology and Chemistry
    Volume36
    Issue number12
    DOIs
    StatePublished - Dec 2017

    Bibliographical note

    Funding Information:
    Disclaimer—This manuscript has been reviewed in accordance with the requirements of the US Environmental Protection Agency (USEPA) Office of Research and Development and Office of Pesticide Programs. The views expressed in the present study are those of the authors and do not necessarily reflect the views or policies of the USEPA, nor does the mention of trade names or commercial products constitute endorsement or recommendation for use.

    Keywords

    • Annotation
    • Browser
    • Fathead
    • Genome
    • Pimephales

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