GenomeComp: A visualization tool for microbial genome comparison

Jian Yang, Jinhua Wang, Zhi Jian Yao, Qi Jin, Yan Shen, Runsheng Chen

Research output: Contribution to journalArticlepeer-review

33 Scopus citations

Abstract

We have developed a software tool, GenomeComp, for summarizing, parsing and visualizing the genome sequences comparison results derived from voluminous BLAST textual output. With GenomeComp, the variation between genomes can be easily highlighted, such as repeat regions, insertions, deletions and rearrangements of genomic segments. This software provides a new visualizing tool for microbe comparative genomics.

Original languageEnglish (US)
Pages (from-to)423-426
Number of pages4
JournalJournal of Microbiological Methods
Volume54
Issue number3
DOIs
StatePublished - Sep 1 2003

Bibliographical note

Funding Information:
The development of GenomeComp was funded by the Chinese Academy of Sciences Grant No. KSCX2-2-07.

Keywords

  • Perl/Tk
  • Visualization
  • Whole-genome comparison

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