How the pan-genome is changing crop genomics and improvement

Rafael Della Coletta; Yinjie Qiu; Shujun Ou; Matthew B. Hufford; Candice N. Hirsch

doi:10.1186/s13059-020-02224-8

How the pan-genome is changing crop genomics and improvement

Rafael Della Coletta, Yinjie Qiu, Shujun Ou, Matthew B. Hufford, Candice N. Hirsch

Agronomy and Plant Genetics

Research output: Contribution to journal › Review article › peer-review

112 Scopus citations

Abstract

Crop genomics has seen dramatic advances in recent years due to improvements in sequencing technology, assembly methods, and computational resources. These advances have led to the development of new tools to facilitate crop improvement. The study of structural variation within species and the characterization of the pan-genome has revealed extensive genome content variation among individuals within a species that is paradigm shifting to crop genomics and improvement. Here, we review advances in crop genomics and how utilization of these tools is shifting in light of pan-genomes that are becoming available for many crop species.

Original language	English (US)
Article number	3
Journal	Genome biology
Volume	22
Issue number	1
DOIs	https://doi.org/10.1186/s13059-020-02224-8
State	Published - Dec 2021

Bibliographical note

Funding Information:
This work was supported in part by the United States Department of Agriculture (2018-67013-27571) and the National Science Foundation (Grants IOS-1546727, IOS-1934384, IOS-1744001, and IOS-1546719).

Publisher Copyright:
© 2021, The Author(s).

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AU - Hirsch, Candice N.

N1 - Funding Information: This work was supported in part by the United States Department of Agriculture (2018-67013-27571) and the National Science Foundation (Grants IOS-1546727, IOS-1934384, IOS-1744001, and IOS-1546719). Publisher Copyright: © 2021, The Author(s).

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How the pan-genome is changing crop genomics and improvement

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