Network propagation models for gene selection

Wei Zhang; Baryun Hwang; Baolin Wu; Rui Kuang

doi:10.1109/GENSIPS.2010.5719689

Network propagation models for gene selection

Wei Zhang, Baryun Hwang, Baolin Wu, Rui Kuang

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

2 Scopus citations

Abstract

In this paper, we explore several network propagation methods for gene selection from microarray gene expression datasets. The network propagation methods capture gene co-expression and differential expression with unified machine learning frameworks. Large scale experiments on five breast cancer datasets validated that the network propagation methods are capable of selecting genes that are more biologically interpretable and more consistent across multiple datasets, compared with the existing approaches.

Original language	English (US)
Title of host publication	2010 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2010
DOIs	https://doi.org/10.1109/GENSIPS.2010.5719689
State	Published - 2010
Event	2010 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2010 - Cold Spring Harbor, NY, United States Duration: Nov 10 2010 → Nov 12 2010

Publication series

Name	2010 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2010

Other

Other	2010 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2010
Country/Territory	United States
City	Cold Spring Harbor, NY
Period	11/10/10 → 11/12/10

Keywords

Biomarkers
Breast cancer metastasis
Gene expression
Network propagation

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

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10.1109/GENSIPS.2010.5719689

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Network propagation models for gene selection. / Zhang, Wei; Hwang, Baryun; Wu, Baolin et al.
2010 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2010. 2010. 5719689 (2010 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2010).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Zhang, W, Hwang, B, Wu, B & Kuang, R 2010, Network propagation models for gene selection. in 2010 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2010., 5719689, 2010 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2010, 2010 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSIPS 2010, Cold Spring Harbor, NY, United States, 11/10/10. https://doi.org/10.1109/GENSIPS.2010.5719689

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Network propagation models for gene selection

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Keywords

UN SDGs

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