New structural motif for carboxylic acid perhydrolases

Delu Yin, Vince M. Purpero, Ryota Fujii, Qing Jing, Romas J Kazlauskas

Research output: Contribution to journalArticlepeer-review

6 Scopus citations

Abstract

Some serine hydrolases also catalyze a promiscuous reaction - reversible perhydrolysis of carboxylic acids to make peroxycarboxylic acids. Five X-ray crystal structures of these carboxylic acid perhydrolases show a proline in the oxyanion loop. Here, we test whether this proline is essential for high perhydrolysis activity using Pseudomonas fluorescens esterase (PFE). The L29P variant of this esterase catalyzes perhydrolysis 43-fold faster (kcat comparison) than the wild type. Surprisingly, saturation mutagenesis at the 29 position of PFE identified six other amino acid substitutions that increase perhydrolysis of acetic acid at least fourfold over the wild type. The best variant, L29I PFE, catalyzed perhydrolysis 83-times faster (kcat comparison) than wild-type PFE and twice as fast as L29P PFE. Despite the different amino acid in the oxyanion loop, L29I PFE shows a similar selectivity for hydrogen peroxide over water as L29P PFE (β0=170 vs. 160 M-1), and a similar fast formation of acetyl-enzyme (140 vs. 62 U mg-1). X-ray crystal structures of L29I PFE with and without bound acetate show an unusual mixture of two different oxyanion loop conformations. The type II β-turn conformation resembles the wild-type structure and is unlikely to increase perhydrolysis, but the type I β-turn conformation creates a binding site for a second acetate. Modeling suggests that a previously proposed mechanism for L29P PFE can be extended to include L29I PFE, so that an acetate accepts a hydrogen bond to promote faster formation of the acetyl-enzyme. Ulterior motif: An esterase variant (L29I; see figure) uses a new mechanism for perhydrolysis of acetic acid, likely involving a second acetate molecule. X-ray crystal structures of L29I PFE with and without bound acetate show an unusual mixture of two different oxyanion loop conformations that creates a binding site for the second acetate.

Original languageEnglish (US)
Pages (from-to)3037-3046
Number of pages10
JournalChemistry - A European Journal
Volume19
Issue number9
DOIs
StatePublished - Feb 25 2013

Keywords

  • X-ray crystallography
  • esterase
  • kinetics
  • perhydrolysis
  • protein engineering

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