TY - JOUR
T1 - Probing the structural plasticity of an archaeal primordial cobaltochelatase CbiXS
AU - Pisarchik, Alexander
AU - Petri, Ralf
AU - Schmidt-Dannert, Claudia
PY - 2007/6
Y1 - 2007/6
N2 - Insertion of metal ions into tetrapyrrole macrocycles is catalyzed by a diverse group of enzymes called chelatases. Structures are known for several chelatases catalyzing metal insertion into protoporphyrin IX or sirohydrochlorin. Despite a lack of significant amino acid sequence similarity, these ferro- and cobaltochelatases share a high degree of structural similarity. Cobaltochelatase CbiK and ferrochelatase HemH are bilobial enzymes with two α/β domains, which were suggested to origin from a common ancestral protein via gene duplication. Small, single-domain chelatases (CbiXS) were recently described in archaea and are believed to represent primordial chelatases. Here, we tested the structural plasticity of an archaeal cobaltochelatase CbiXS by rearranging its structure with a novel method producing random in-frame deletions, duplications and insertions. A number of functional chelatase variants with insertion of duplicated sequence stretches, encompassing from one to nine secondary structural elements, were obtained. CbiXS was found to tolerate large sequence rearrangements in four out of the nine loop regions of the protein, indicating a high degree of structural plasticity. The predicted topologies of two variants (M51 and M518) are strikingly similar to CbiK and HemH, suggesting that we recreated duplication events that are believed to have created the bilobial chelatases.
AB - Insertion of metal ions into tetrapyrrole macrocycles is catalyzed by a diverse group of enzymes called chelatases. Structures are known for several chelatases catalyzing metal insertion into protoporphyrin IX or sirohydrochlorin. Despite a lack of significant amino acid sequence similarity, these ferro- and cobaltochelatases share a high degree of structural similarity. Cobaltochelatase CbiK and ferrochelatase HemH are bilobial enzymes with two α/β domains, which were suggested to origin from a common ancestral protein via gene duplication. Small, single-domain chelatases (CbiXS) were recently described in archaea and are believed to represent primordial chelatases. Here, we tested the structural plasticity of an archaeal cobaltochelatase CbiXS by rearranging its structure with a novel method producing random in-frame deletions, duplications and insertions. A number of functional chelatase variants with insertion of duplicated sequence stretches, encompassing from one to nine secondary structural elements, were obtained. CbiXS was found to tolerate large sequence rearrangements in four out of the nine loop regions of the protein, indicating a high degree of structural plasticity. The predicted topologies of two variants (M51 and M518) are strikingly similar to CbiK and HemH, suggesting that we recreated duplication events that are believed to have created the bilobial chelatases.
KW - CbiK
KW - CbiX
KW - Chelatase
KW - Directed evolution
KW - HemH
UR - http://www.scopus.com/inward/record.url?scp=34547762712&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=34547762712&partnerID=8YFLogxK
U2 - 10.1093/protein/gzm018
DO - 10.1093/protein/gzm018
M3 - Article
C2 - 17584754
AN - SCOPUS:34547762712
SN - 1741-0126
VL - 20
SP - 257
EP - 265
JO - Protein Engineering, Design and Selection
JF - Protein Engineering, Design and Selection
IS - 6
ER -