Quantitative proteomic analyses of the microbial degradation of estrone under various background nitrogen and carbon conditions

Zhe Du, Yinguang Chen, Xu Li

Research output: Contribution to journalArticlepeer-review

10 Scopus citations

Abstract

Microbial degradation of estrogenic compounds can be affected by the nitrogen source and background carbon in the environment. However, the underlying mechanisms are not well understood. The objective of this study was to elucidate the molecular mechanisms of estrone (E1) biodegradation at the protein level under various background nitrogen (nitrate or ammonium) and carbon conditions (no background carbon, acetic acid, or humic acid as background carbon) by a newly isolated bacterial strain. The E1 degrading bacterial strain, Hydrogenophaga atypica ZD1, was isolated from river sediments and its proteome was characterized under various experimental conditions using quantitative proteomics. Results show that the E1 degradation rate was faster when ammonium was used as the nitrogen source than with nitrate. The degradation rate was also faster when either acetic acid or humic acid was present in the background. Proteomics analyses suggested that the E1 biodegradation products enter the tyrosine metabolism pathway. Compared to nitrate, ammonium likely promoted E1 degradation by increasing the activities of the branched-chain-amino-acid aminotransferase (IlvE) and enzymes involved in the glutamine synthetase-glutamine oxoglutarate aminotransferase (GS-GOGAT) pathway. The increased E1 degradation rate with acetic acid or humic acid in the background can also be attributed to the up-regulation of IlvE. Results from this study can help predict and explain E1 biodegradation kinetics under various environmental conditions.

Original languageEnglish (US)
Pages (from-to)361-368
Number of pages8
JournalWater Research
Volume123
DOIs
StatePublished - 2017

Bibliographical note

Funding Information:
We thank Dr. Jiri Adamec of the UNL Redox Biology Center for assistance in proteomic analyses. The core facility was supported by the NIH Grant P30GM103335. The work was partially supported by NSF Grant CBET-1351676.

Publisher Copyright:
© 2017 Elsevier Ltd

Copyright:
Copyright 2020 Elsevier B.V., All rights reserved.

Keywords

  • Background carbon substrates
  • Degradation pathway
  • Estrone
  • Microbial degradation
  • Nitrogen source
  • Quantitative proteomics

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