Transcriptome analysis identifies the dysregulation of ultraviolet target genes in human skin cancers

Yao Shen, Arianna L. Kim, Rong Du, Liang Liu

Research output: Contribution to journalArticlepeer-review

9 Scopus citations

Abstract

Exposure to ultraviolet radiation (UVR) is a major risk factor for both melanoma and nonmelanoma skin cancers. In addition to its mutagenic effect, UVR can also induce substantial transcriptional instability in skin cells affecting thousands of genes, including many cancer genes, suggesting that transcriptional instability may be another important etiological factor in skin photocarcinogenesis. In this study, we performed detailed transcriptomic profiling studies to characterize the kinetic changes in global gene expression in human keratinocytes exposed to different UVR conditions. We identified a subset of UV-responsive genes as UV signature genes (UVSGs) based on 1) conserved UV-responsiveness of this subset of genes among different keratinocyte lines; and 2) UV-induced persistent changes in their mRNA levels long after exposure. Interestingly, 11 of the UVSGs were shown to be critical to skin cancer cell proliferation and survival. Through computational Gene Set Enrichment Analysis, we demonstrated that a significant portion of the UVSGs were dysregulated in human skin squamous cell carcinomas, but not in other human malignancies. This highlights the potential and specificity of the UVSGs in clinical diagnosis of UV damage and stratification of skin cancer risk.

Original languageEnglish (US)
Article numbere0163054
JournalPloS one
Volume11
Issue number9
DOIs
StatePublished - Sep 2016
Externally publishedYes

Bibliographical note

Funding Information:
This work was supported by the National Institute of Arthritis and Musculoskeletal and Skin Diseases of the National Institutes of Health under Award Number K01AR064315, the Columbia University Skin Disease Research Center grant P30AR44535, the Center for Environmental Health in Northern Manhattan P30ES009089, and the American Skin Association

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