Antagonism influences assembly of a Bacillus guild in a local community and is depicted as a food-chain network

Rocío Anaís Pérez-Gutiérrez, Varinia López-Ramírez, África Islas, Luis David Alcaraz, Ismael Hernández-González, Beatriz Carely Luna Olivera, Moisés Santillán, Luis E. Eguiarte, Valeria Souza, Michael Travisano, Gabriela Olmedo-Alvarez

Research output: Contribution to journalArticlepeer-review

48 Scopus citations

Abstract

Understanding the principles that govern community assemblages is a central goal of ecology. There is limited experimental evidence in natural settings showing that microbial assembly in communities are influenced by antagonistic interactions. We, therefore, analyzed antagonism among bacterial isolates from a taxonomically related bacterial guild obtained from five sites in sediments from a fresh water system. We hypothesized that if antagonistic interactions acted as a shaping force of the community assembly, then the frequency of resistance to antagonism among bacterial isolates originating from a given site would be higher than the resistance to conspecifics originating from a different assemblage. Antagonism assays were conducted between 78 thermoresistant isolates, of which 72 were Bacillus spp. Sensitive, resistant and antagonistic isolates co-occurred at each site, but the within-site frequency of resistance observed was higher than that observed when assessed across-sites. We found that antagonism results from bacteriocin-like substances aimed at the exclusion of conspecifics. More than 6000 interactions were scored and described by a directed network with hierarchical structure that exhibited properties that resembled a food chain, where the different Bacillus taxonomic groups occupied specific positions. For some tested interacting pairs, the unidirectional interaction could be explained by competition that inhibited growth or completely excluded one of the pair members. This is the first report on the prevalence and specificity of Bacillus interactions in a natural setting and provides evidence for the influence of bacterial antagonist interactions in the assemblage of a taxonomically related guild in local communities.

Original languageEnglish (US)
Pages (from-to)487-497
Number of pages11
JournalISME Journal
Volume7
Issue number3
DOIs
StatePublished - Mar 2013

Bibliographical note

Funding Information:
We thank Dr Ma Jesús Puy for sediment description, Francisco Ayala, Mónica Hernández, LP Decena-Segarra, I Corona-Guerrero, VM Delgado-Franyutti, CE, AP Pardo-Arredondo, CE Beltrán-Valdez and MS Torres-Navarro for technical assistance, JA Cisneros and JE Reynoso for help with drawings and photographs, G Bonilla-Rosso for his help performing the Mothur analysis. R-A P-G, VL-R, and LDA were supported by fellowships from CONACYT. This work was financed through a multidisciplinary grant from Cinvestav to GO.

Keywords

  • antagonism network
  • antagonistic interactions
  • community assemblage
  • interference interactions
  • local communities
  • self-organization

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