Bioconda: Sustainable and comprehensive software distribution for the life sciences

Ryan Dale, Björn Grüning, Andreas Sjödin, Jillian Rowe, Brad A. Chapman, Christopher H. Tomkins-Tinch, Renan Valieris, Bérénice Batut, Adam Caprez, Thomas Cokelaer, Dilmurat Yusuf, Kyle A. Beauchamp, Karel Brinda, Thomas Wollmann, Gildas Le Corguillé, Devon Ryan, Anthony Bretaudeau, Youri Hoogstrate, Brent S. Pedersen, Simon van HeeringenMartin Raden, Sebastian Luna-Valero, Nicola Soranzo, Matthias De Smet, Greg Von Kuster, Rory Kirchner, Lorena Pantano, Zachary Charlop-Powers, Kevin Thornton, Marcel Martin, Marius van den Beek, Daniel Maticzka, Milad Miladi, Sebastian Will, Kévin Gravouil, Per Unneberg, Christian Brueffer, Clemens Blank, Vitor C. Piro, Joachim Wolff, Tiago Antao, Simon Gladman, Ilya Shlyakhter, Mattias de Hollander, Philip Mabon, Wei Shen, Jorrit Boekel, Manuel Holtgrewe, Dave Bouvier, Julian R. de Ruiter, Jennifer Cabral, Saket Choudhary, Nicholas Harding, Robert Kleinkauf, Eric Enns, Florian Eggenhofer, Joseph Brown, Peter J.A. Cock, Henning Timm, Cristel Thomas, Xiao Ou Zhang, Matt Chambers, Nitesh Turaga, Enrico Seiler, Colin Brislawn, Elmar Pruesse, Jörg Fallmann, Jerome Kelleher, Hai Nguyen, Lance Parsons, Zhuoqing Fang, Endre Bakken Stovner, Nicholas Stoler, Simon Ye, Inken Wohlers, Rick Farouni, Mallory Freeberg, James E Johnson, Marcel Bargull, Philip Reiner Kensche, Timothy H. Webster, John M. Eppley, Christoph Stahl, Alexander S. Rose, Alex Reynolds, Liang Bo Wang, Xavier Garnier, Simon Dirmeier, Michael Knudsen, James Taylor, Avi Srivastava, Vivek Rai, Rasmus Agren, Alexander Junge, Roman Valls Guimera, Aziz Khan, Sebastian Schmeier, Guowei He, Luca Pinello, Emil Hägglund, Alexander S. Mikheyev, Jens Preussner, Nicholas R. Waters, Wei Li, Jordi Capellades, Aroon T. Chande, Yuri Pirola, Saskia Hiltemann, Matthew L. Bendall, Sourav Singh, W. Augustine Dunn, Alexandre Drouin, Tomás Di Domenico, Ino de Bruijn, David E. Larson, Davide Chicco, Elena Grassi, Giorgio Gonnella, Jaivarsan B, Liya Wang, Franck Giacomoni, Erik Clarke, Daniel Blankenberg, Camy Tran, Rob Patro, Sacha Laurent, Matthew Gopez, Bengt Sennblad, Jasmijn A. Baaijens, Philip Ewels, Patrick R. Wright, Oana M. Enache, Pierrick Roger, Will Dampier, David Koppstein, Upendra Kumar Devisetty, Tobias Rausch, Macintosh Cornwell, Adrian Emanuel Salatino, Julien Seiler, Matthieu Jung, Etienne Kornobis, Fabio Cumbo, Bianca Katharina Stöcker, Oleksandr Moskalenko, Daniel R. Bogema, Matthew L. Workentine, Stephen J. Newhouse, Felipe da Veiga Leprevost, Kevin Arvai, Johannes Köster

Research output: Contribution to journalArticlepeer-review

140 Scopus citations
Original languageEnglish (US)
Pages (from-to)475-476
Number of pages2
JournalNature Methods
Volume15
Issue number7
DOIs
StatePublished - Jul 1 2018

Bibliographical note

Funding Information:
We thank all contributors, the conda-forge team, and Anaconda Inc. for excellent cooperation. Further, we thank Travis CI (https://travis-ci.com) and Circle CI (https://circleci.com) for providing free Linux and macOS computing capacity. Finally, we thank ELIXIR (https://www.elixir-europe.org) for constant support and donation of staff. This work was supported by the Intramural Program of the National Institute of Diabetes and Digestive and Kidney Diseases, US National Institutes of Health (R.D.), the Netherlands Organisation for Scientific Research (NWO) (VENI grant 016. Veni.173.076 to J.K.), the German Research Foundation (SFB 876 to J.K.), and the NYU Abu Dhabi Research Institute for the NYU Abu Dhabi Center for Genomics and Systems Biology, program number CGSB1 (grant to J.R. and A. Yousif).

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