TY - JOUR
T1 - Competitive electrostatic binding of charged ligands to polyelectrolytes
T2 - Practical approach using the non-linear Poisson-Boltzmann equation
AU - Rouzina, Ioulia
AU - Bloomfield, Victor A.
N1 - Copyright:
Copyright 2004 Elsevier Science B.V., Amsterdam. All rights reserved.
PY - 1997/2/28
Y1 - 1997/2/28
N2 - We have developed a practical analytical treatment of the non-linear Poisson-Boltzmann (P-B) equation to characterize the strong but non-specific binding of charged ligands to DNA and other highly charged macromolecules. These reactions are notable for their strong salt dependence and anti-cooperativity, features which the theory fully explains. We summarize analytical results for concentration profiles and ion binding in various regimes of surface curvature and ionic strength, and show how counterion size and charge distribution may influence competitive binding. We present several practical applications of the formalism, showing how to estimate the ligand concentration needed to effectively compete with a given buffer salt, and how to calculate the amounts of counterion species bound at various distances from the DNA surface under given bulk solution conditions. We cast our results into the form of a Scatchard binding isotherm, showing how the apparent binding constant K(obs) and S = -dlog K(obs)/dlog[M+] can be predicted from the basic theory. Anti-cooperativity arises naturally without steric repulsion, and binding curves can be fitted with K(obs) and effective charge as the only free parameters. We extend the analytical P-B analysis to an arbitrary number of counterion species, and apply the results to fit and predict three-ion competition data.
AB - We have developed a practical analytical treatment of the non-linear Poisson-Boltzmann (P-B) equation to characterize the strong but non-specific binding of charged ligands to DNA and other highly charged macromolecules. These reactions are notable for their strong salt dependence and anti-cooperativity, features which the theory fully explains. We summarize analytical results for concentration profiles and ion binding in various regimes of surface curvature and ionic strength, and show how counterion size and charge distribution may influence competitive binding. We present several practical applications of the formalism, showing how to estimate the ligand concentration needed to effectively compete with a given buffer salt, and how to calculate the amounts of counterion species bound at various distances from the DNA surface under given bulk solution conditions. We cast our results into the form of a Scatchard binding isotherm, showing how the apparent binding constant K(obs) and S = -dlog K(obs)/dlog[M+] can be predicted from the basic theory. Anti-cooperativity arises naturally without steric repulsion, and binding curves can be fitted with K(obs) and effective charge as the only free parameters. We extend the analytical P-B analysis to an arbitrary number of counterion species, and apply the results to fit and predict three-ion competition data.
KW - Charged ligands
KW - Competitive electrostatic binding
KW - Non-linear Poisson-Boltzmann equation
KW - Polyelectrolytes
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U2 - 10.1016/S0301-4622(96)02231-4
DO - 10.1016/S0301-4622(96)02231-4
M3 - Article
C2 - 17029833
AN - SCOPUS:0030932899
SN - 0301-4622
VL - 64
SP - 139
EP - 155
JO - Biophysical Chemistry
JF - Biophysical Chemistry
IS - 1-3
ER -