Gene family expansion of pinewood nematode to detoxify its host defence chemicals

Wei Zhang, Haiying Yu, Yunxue Lv, Kathryn E. Bushley, Jacob D. Wickham, Shenghan Gao, Songnian Hu, Lilin Zhao, Jianghua Sun

Research output: Contribution to journalArticlepeer-review


Gene gain/loss in the context of gene family dynamics plays an important role in evolutionary processes as organisms, particularly invasive species, adapt to new environments or niches. One notable example of this is the duplication of digestive proteases in some parasitic insects and helminths to meet nutritional requirements during animal parasitism. However, whether gene family expansion participates in the adaptation of a plant parasite nematode to its host remains unknown. Here, we compared the newly sequenced genomes of the pinewood nematode, Bursaphelenchus xylophilus, with the genomes of free-living, animal-parasitic and plant-parasitic nematodes. The results showed gene expansions occurring in 51 gene families in B. xylophilus, especially in xenobiotic detoxification pathways, including flavin monooxygenase (FMO), cytochrome P450 (CYP450), short chain dehydrogenase (SDR), alcohol dehydrogenase (ADH), aldehyde dehydrogenase (ALDH), UDP-glucuronosyltransferase (UGT) and glutathione S-transferase (GST). Although a majority of these expansions probably resulted from gene duplications, nine ADH genes were potentially acquired by horizontal gene transfer (HGT) from fungi. From the transcriptomes of B. xylophilus treated with pine saplings and terpenes, candidate xenobiotic detoxification genes were identified. We propose that host defence chemicals led to gene family expansions of xenobiotic detoxification pathways in B. xylophilus facilitating its survival in pine resin ducts. This study contributes to a better understanding of how a parasitic nematode adapts to its host.

Original languageEnglish (US)
Pages (from-to)940-955
Number of pages16
JournalMolecular ecology
Issue number5
StatePublished - Mar 1 2020

Bibliographical note

Funding Information:
This work was funded by the National Natural Science Foundation of China (31630013) and Frontier Science Key Project of the Chinese Academy of Sciences (QYZDJ-SSW-SMC024). Taisei Kikuchi (Forestry and Forest Products Research Institute, Tsukuba, Japan) is thanked for the JP-Ka4C1 isolate PWN genome uploader.

Publisher Copyright:
© 2020 John Wiley & Sons Ltd

Copyright 2020 Elsevier B.V., All rights reserved.


  • gene family expansion
  • genomics/transcriptomes
  • invasive species
  • molecular evolution
  • plant parasite nematode
  • xenobiotic detoxification pathways

PubMed: MeSH publication types

  • Journal Article
  • Research Support, Non-U.S. Gov't

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