TY - JOUR
T1 - Scan-specific robust artificial-neural-networks for k-space interpolation (RAKI) reconstruction
T2 - Database-free deep learning for fast imaging
AU - Akcakaya, Mehmet
AU - Moeller, Steen
AU - Weingärtner, Sebastian
AU - Ugurbil, Kamil
N1 - Publisher Copyright:
© 2018 International Society for Magnetic Resonance in Medicine
PY - 2019/1
Y1 - 2019/1
N2 - Purpose: To develop an improved k-space reconstruction method using scan-specific deep learning that is trained on autocalibration signal (ACS) data. Theory: Robust artificial-neural-networks for k-space interpolation (RAKI) reconstruction trains convolutional neural networks on ACS data. This enables nonlinear estimation of missing k-space lines from acquired k-space data with improved noise resilience, as opposed to conventional linear k-space interpolation-based methods, such as GRAPPA, which are based on linear convolutional kernels. Methods: The training algorithm is implemented using a mean square error loss function over the target points in the ACS region, using a gradient descent algorithm. The neural network contains 3 layers of convolutional operators, with 2 of these including nonlinear activation functions. The noise performance and reconstruction quality of the RAKI method was compared with GRAPPA in phantom, as well as in neurological and cardiac in vivo data sets. Results: Phantom imaging shows that the proposed RAKI method outperforms GRAPPA at high (≥4) acceleration rates, both visually and quantitatively. Quantitative cardiac imaging shows improved noise resilience at high acceleration rates (rate 4:23% and rate 5:48%) over GRAPPA. The same trend of improved noise resilience is also observed in high-resolution brain imaging at high acceleration rates. Conclusion: The RAKI method offers a training database-free deep learning approach for MRI reconstruction, with the potential to improve many existing reconstruction approaches, and is compatible with conventional data acquisition protocols.
AB - Purpose: To develop an improved k-space reconstruction method using scan-specific deep learning that is trained on autocalibration signal (ACS) data. Theory: Robust artificial-neural-networks for k-space interpolation (RAKI) reconstruction trains convolutional neural networks on ACS data. This enables nonlinear estimation of missing k-space lines from acquired k-space data with improved noise resilience, as opposed to conventional linear k-space interpolation-based methods, such as GRAPPA, which are based on linear convolutional kernels. Methods: The training algorithm is implemented using a mean square error loss function over the target points in the ACS region, using a gradient descent algorithm. The neural network contains 3 layers of convolutional operators, with 2 of these including nonlinear activation functions. The noise performance and reconstruction quality of the RAKI method was compared with GRAPPA in phantom, as well as in neurological and cardiac in vivo data sets. Results: Phantom imaging shows that the proposed RAKI method outperforms GRAPPA at high (≥4) acceleration rates, both visually and quantitatively. Quantitative cardiac imaging shows improved noise resilience at high acceleration rates (rate 4:23% and rate 5:48%) over GRAPPA. The same trend of improved noise resilience is also observed in high-resolution brain imaging at high acceleration rates. Conclusion: The RAKI method offers a training database-free deep learning approach for MRI reconstruction, with the potential to improve many existing reconstruction approaches, and is compatible with conventional data acquisition protocols.
KW - accelerated imaging
KW - convolutional neural networks
KW - deep learning
KW - image reconstruction
KW - k-space interpolation
KW - nonlinear estimation
KW - parallel imaging
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U2 - 10.1002/mrm.27420
DO - 10.1002/mrm.27420
M3 - Article
C2 - 30277269
AN - SCOPUS:85053534549
SN - 0740-3194
VL - 81
SP - 439
EP - 453
JO - Magnetic resonance in medicine
JF - Magnetic resonance in medicine
IS - 1
ER -