Whole genome sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, incomplete denitrifiers from the United States Great Basin

Senthil K. Murugapiran; Marcel Huntemann; Chia Lin Wei; James Han; John C. Detter; Cliff S. Han; Tracy H. Erkkila; Hazuki Teshima; Amy Chen; Nikos Kyrpides; Konstantinos Mavrommatis; Victor Markowitz; Ernest Szeto; Natalia Ivanova; Ioanna Pagani; Jenny Lam; Austin I. McDonald; Jeremy A. Dodsworth; Amrita Pati; Lynne Goodwin; Lin Peters; Sam Pitluck; Tanja Woyke; Brian P. Hedlund

doi:10.1128/genomeA.00106-12

Whole genome sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, incomplete denitrifiers from the United States Great Basin

Senthil K. Murugapiran, Marcel Huntemann, Chia Lin Wei, James Han, John C. Detter, Cliff S. Han, Tracy H. Erkkila, Hazuki Teshima, Amy Chen, Nikos Kyrpides, Konstantinos Mavrommatis, Victor Markowitz, Ernest Szeto, Natalia Ivanova, Ioanna Pagani, Jenny Lam, Austin I. McDonald, Jeremy A. Dodsworth, Amrita Pati, Lynne GoodwinLin Peters, Sam Pitluck, Tanja Woyke, Brian P. Hedlund

Plant and Microbial Biology

Research output: Contribution to journal › Article › peer-review

13 Scopus citations

Abstract

The strains Thermus oshimai JL-2 and Thermus thermophilus JL-18 each have a circular chromosome, 2.07 Mb and 1.9 Mb in size, respectively, and each has two plasmids ranging from 0.27 Mb to 57.2 kb. The megaplasmid of each strain contains a gene cluster for the reduction of nitrate to nitrous oxide, consistent with their incomplete denitrification phenotypes.

Original language	English (US)
Article number	e00106-12
Journal	Genome Announcements
Volume	1
Issue number	1
DOIs	https://doi.org/10.1128/genomeA.00106-12
State	Published - 2013

Bibliographical note

Funding Information:
The work conducted by the U.S. Department of Energy Joint Genome Institute is supported by the Office of Science of the U.S. Department of Energy under contract no. DE-AC02-05CH11231. Additional support was provided by NSF grant no. MCB-0546865 and EPS-9977809. We are also grateful for support from Greg Fullmer through the University of Nevada Las Vegas (UNLV) Foundation.

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Murugapiran, S. K., Huntemann, M., Wei, C. L., Han, J., Detter, J. C., Han, C. S., Erkkila, T. H., Teshima, H., Chen, A., Kyrpides, N., Mavrommatis, K., Markowitz, V., Szeto, E., Ivanova, N., Pagani, I., Lam, J., McDonald, A. I., Dodsworth, J. A., Pati, A., ... Hedlund, B. P. (2013). Whole genome sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, incomplete denitrifiers from the United States Great Basin. Genome Announcements, 1(1), [e00106-12]. https://doi.org/10.1128/genomeA.00106-12

Whole genome sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, incomplete denitrifiers from the United States Great Basin. / Murugapiran, Senthil K.; Huntemann, Marcel; Wei, Chia Lin; Han, James; Detter, John C.; Han, Cliff S.; Erkkila, Tracy H.; Teshima, Hazuki; Chen, Amy; Kyrpides, Nikos; Mavrommatis, Konstantinos; Markowitz, Victor; Szeto, Ernest; Ivanova, Natalia; Pagani, Ioanna; Lam, Jenny; McDonald, Austin I.; Dodsworth, Jeremy A.; Pati, Amrita; Goodwin, Lynne; Peters, Lin; Pitluck, Sam; Woyke, Tanja; Hedlund, Brian P.

In: Genome Announcements, Vol. 1, No. 1, e00106-12, 2013.

Research output: Contribution to journal › Article › peer-review

Murugapiran, SK, Huntemann, M, Wei, CL, Han, J, Detter, JC, Han, CS, Erkkila, TH, Teshima, H, Chen, A, Kyrpides, N, Mavrommatis, K, Markowitz, V, Szeto, E, Ivanova, N, Pagani, I, Lam, J, McDonald, AI, Dodsworth, JA, Pati, A, Goodwin, L, Peters, L, Pitluck, S, Woyke, T & Hedlund, BP 2013, 'Whole genome sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, incomplete denitrifiers from the United States Great Basin', Genome Announcements, vol. 1, no. 1, e00106-12. https://doi.org/10.1128/genomeA.00106-12

Murugapiran, Senthil K. ; Huntemann, Marcel ; Wei, Chia Lin ; Han, James ; Detter, John C. ; Han, Cliff S. ; Erkkila, Tracy H. ; Teshima, Hazuki ; Chen, Amy ; Kyrpides, Nikos ; Mavrommatis, Konstantinos ; Markowitz, Victor ; Szeto, Ernest ; Ivanova, Natalia ; Pagani, Ioanna ; Lam, Jenny ; McDonald, Austin I. ; Dodsworth, Jeremy A. ; Pati, Amrita ; Goodwin, Lynne ; Peters, Lin ; Pitluck, Sam ; Woyke, Tanja ; Hedlund, Brian P. / Whole genome sequencing of Thermus oshimai JL-2 and Thermus thermophilus JL-18, incomplete denitrifiers from the United States Great Basin. In: Genome Announcements. 2013 ; Vol. 1, No. 1.

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abstract = "The strains Thermus oshimai JL-2 and Thermus thermophilus JL-18 each have a circular chromosome, 2.07 Mb and 1.9 Mb in size, respectively, and each has two plasmids ranging from 0.27 Mb to 57.2 kb. The megaplasmid of each strain contains a gene cluster for the reduction of nitrate to nitrous oxide, consistent with their incomplete denitrification phenotypes.",

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AU - Dodsworth, Jeremy A.

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